RVdb StrainID ANS07398 GenBank Accession JF285324.1
Species RVA Sequence Length 7093 nt
Serotype 64  Checked by RVdb Serotype (GenBank) 64
Definition Human rhinovirus A isolate P37_URT_LCT-0d polyprotein gene, complete cds GenBank Submission Date 2014-01-31
Strain Name P37_URT_LCT-0d Sampling Date 2001-01-24
Sampling Country Switzerland Sampling location Geneva
Isolation Source nasopharyngeal swab NCBI Taxon ID 147711
Sequencing Technology -N/A- Assembly Method -N/A-

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQA030053 1A (VP4) 594 800 0 0 207
SQA030054 1B (VP2) 801 1583 0 0 783
SQA030055 1C (VP3) 1584 2294 0 0 711
SQA030056 1D (VP1) 2295 3161 0 0 867
SQA030057 2A (P2-A) 3162 3587 0 0 426
SQA030058 2B (P2-B) 3588 3872 0 0 285
SQA030059 2C (P2-C) 3873 4838 0 0 966
SQA030060 3'UTR 7065 7093 0 1 29
SQA030061 3A (P3-A) 4839 5069 0 0 231
SQA030062 3B (VPg) 5070 5132 0 0 63
SQA030063 protease 3C 5133 5681 0 0 549
SQA030064 3D 5682 7061 0 0 1380
SQA030065 5'UTR 1 593 1 0 593
SQA030066 CDS 594 7064 0 0 6471
SQA030067 VP4/2 594 1028 0 0 435
SQA030068 genome 1 7093 1 1 7093
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPA002780 protease 3C 1514 1696 0 0 183
SPA002781 3D 1697 2156 0 0 460
SPA002782 3B (VPg) 1493 1513 0 0 21
SPA002783 3A (P3-A) 1416 1492 0 0 77
SPA002784 2C (P2-C) 1094 1415 0 0 322
SPA002785 2B (P2-B) 999 1093 0 0 95
SPA002786 2A (P2-A) 857 998 0 0 142
SPA002787 1D (VP1) 568 856 0 0 289
SPA002788 1C (VP3) 331 567 0 0 237
SPA002789 1B (VP2) 70 330 0 0 261
SPA002790 1A (VP4) 1 69 0 0 69
SPA002791 VP4/2 1 145 0 0 145
SPA002792 CDS 1 2156 0 0 2156
PMID Title Publication Year Journal View in RVdb
21713005 Rhinovirus genome variation during chronic upper and lower respiratory tract infections. 2011 PLoS One View More