| RVdb StrainID | ANS07238 | GenBank Accession | JF781504.1 |
| Species | RVA | Sequence Length | 7109 nt |
| Serotype | 65 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus A strain HRV-A65_s202442_2007 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A65_s202442_2007 | Sampling Date | from 1999 to 2010 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina GAIIx | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029978 | 1A (VP4) | 601 | 807 | 0 | 0 | 207 | |
| SQA029979 | 1B (VP2) | 808 | 1593 | 0 | 0 | 786 | |
| SQA029980 | 1C (VP3) | 1594 | 2307 | 0 | 0 | 714 | |
| SQA029981 | 1D (VP1) | 2308 | 3195 | 0 | 0 | 888 | |
| SQA029982 | 2A (P2-A) | 3196 | 3633 | 0 | 0 | 438 | |
| SQA029983 | 2B (P2-B) | 3634 | 3915 | 0 | 0 | 282 | |
| SQA029984 | 2C (P2-C) | 3916 | 4878 | 0 | 0 | 963 | |
| SQA029985 | 3A (P3-A) | 4879 | 5112 | 0 | 0 | 234 | |
| SQA029986 | 3B (VPg) | 5113 | 5175 | 0 | 0 | 63 | |
| SQA029987 | protease 3C | 5176 | 5724 | 0 | 0 | 549 | |
| SQA029988 | 3D | 5725 | 7101 | 0 | 0 | 1377 | |
| SQA029989 | 5'UTR | 1 | 600 | 1 | 0 | 600 | |
| SQA029990 | CDS | 601 | 7104 | 0 | 0 | 6504 | |
| SQA029991 | VP4/2 | 601 | 1035 | 0 | 0 | 435 | |
| SQA029992 | genome | 1 | 7109 | 1 | 1 | 7109 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003076 | protease 3C | 1526 | 1708 | 0 | 0 | 183 | |
| SPA003077 | 3D | 1709 | 2167 | 0 | 0 | 459 | |
| SPA003078 | 3B (VPg) | 1505 | 1525 | 0 | 0 | 21 | |
| SPA003079 | 3A (P3-A) | 1427 | 1504 | 0 | 0 | 78 | |
| SPA003080 | 2C (P2-C) | 1106 | 1426 | 0 | 0 | 321 | |
| SPA003081 | 2B (P2-B) | 1012 | 1105 | 0 | 0 | 94 | |
| SPA003082 | 2A (P2-A) | 866 | 1011 | 0 | 0 | 146 | |
| SPA003083 | 1D (VP1) | 570 | 865 | 0 | 0 | 296 | |
| SPA003084 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA003085 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA003086 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003087 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003088 | CDS | 1 | 2167 | 0 | 0 | 2167 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |