| RVdb StrainID | ANS07228 | GenBank Accession | JN541270.1 |
| Species | RVA | Sequence Length | 6984 nt |
| Serotype | 20 Checked by RVdb | Serotype (GenBank) | 20 |
| Definition | Human rhinovirus A strain HRV-A20_p1080_sR698_2008 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A20_p1080_sR698_2008 | Sampling Date | 2008-09-13 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029946 | 1A (VP4) | 441 | 647 | 0 | 0 | 207 | |
| SQA029947 | 1B (VP2) | 648 | 1433 | 0 | 0 | 786 | |
| SQA029948 | 1C (VP3) | 1434 | 2150 | 0 | 0 | 717 | |
| SQA029949 | 1D (VP1) | 2151 | 3041 | 0 | 0 | 891 | |
| SQA029950 | 2A (P2-A) | 3042 | 3470 | 0 | 0 | 429 | |
| SQA029951 | 2B (P2-B) | 3471 | 3755 | 0 | 0 | 285 | |
| SQA029952 | 2C (P2-C) | 3756 | 4718 | 0 | 0 | 963 | |
| SQA029953 | 3'UTR | 6945 | 6984 | 0 | 1 | 40 | |
| SQA029954 | 3A (P3-A) | 4719 | 4952 | 0 | 0 | 234 | |
| SQA029955 | 3B (VPg) | 4953 | 5015 | 0 | 0 | 63 | |
| SQA029956 | protease 3C | 5016 | 5564 | 0 | 0 | 549 | |
| SQA029957 | 3D | 5565 | 6941 | 0 | 0 | 1377 | |
| SQA029958 | 5'UTR | 1 | 440 | 1 | 0 | 440 | |
| SQA029959 | CDS | 441 | 6944 | 0 | 0 | 6504 | |
| SQA029960 | VP4/2 | 441 | 875 | 0 | 0 | 435 | |
| SQA029961 | genome | 1 | 6984 | 1 | 1 | 6984 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003406 | protease 3C | 1526 | 1708 | 0 | 0 | 183 | |
| SPA003407 | 3D | 1709 | 2167 | 0 | 0 | 459 | |
| SPA003408 | 3B (VPg) | 1505 | 1525 | 0 | 0 | 21 | |
| SPA003409 | 3A (P3-A) | 1427 | 1504 | 0 | 0 | 78 | |
| SPA003410 | 2C (P2-C) | 1106 | 1426 | 0 | 0 | 321 | |
| SPA003411 | 2B (P2-B) | 1011 | 1105 | 0 | 0 | 95 | |
| SPA003412 | 2A (P2-A) | 868 | 1010 | 0 | 0 | 143 | |
| SPA003413 | 1D (VP1) | 571 | 867 | 0 | 0 | 297 | |
| SPA003414 | 1C (VP3) | 332 | 570 | 0 | 0 | 239 | |
| SPA003415 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA003416 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003417 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003418 | CDS | 1 | 2167 | 0 | 0 | 2167 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |