| RVdb StrainID | ANS07223 | GenBank Accession | JN562727.1 |
| Species | RVA | Sequence Length | 6843 nt |
| Serotype | 104 Corrected by RVdb | Serotype (GenBank) | 24 |
| Definition | Human rhinovirus A strain HRV-A24_p1025_sR2625_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A24_p1025_sR2625_2009 | Sampling Date | 2009-03-04 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029932 | 1A (VP4) | 390 | 596 | 0 | 0 | 207 | |
| SQA029933 | 1B (VP2) | 597 | 1382 | 0 | 0 | 786 | |
| SQA029934 | 1C (VP3) | 1383 | 2096 | 0 | 0 | 714 | |
| SQA029935 | 1D (VP1) | 2097 | 2951 | 0 | 0 | 855 | |
| SQA029936 | 2A (P2-A) | 2952 | 3377 | 0 | 0 | 426 | |
| SQA029937 | 2B (P2-B) | 3378 | 3662 | 0 | 0 | 285 | |
| SQA029938 | 2C (P2-C) | 3663 | 4628 | 0 | 0 | 966 | |
| SQA029939 | 3A (P3-A) | 4629 | 4859 | 0 | 0 | 231 | |
| SQA029940 | 3B (VPg) | 4860 | 4922 | 0 | 0 | 63 | |
| SQA029941 | protease 3C | 4923 | 5471 | 0 | 0 | 549 | |
| SQA029942 | 3D | 5472 | 6843 | 0 | 1 | 1372 | |
| SQA029943 | 5'UTR | 1 | 389 | 1 | 0 | 389 | |
| SQA029944 | CDS | 390 | 6843 | 0 | 1 | 6454 | |
| SQA029945 | VP4/2 | 390 | 824 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003471 | protease 3C | 1512 | 1694 | 0 | 0 | 183 | |
| SPA003472 | 3D | 1695 | 2151 | 0 | 1 | 457 | |
| SPA003473 | 3B (VPg) | 1491 | 1511 | 0 | 0 | 21 | |
| SPA003474 | 3A (P3-A) | 1414 | 1490 | 0 | 0 | 77 | |
| SPA003475 | 2C (P2-C) | 1092 | 1413 | 0 | 0 | 322 | |
| SPA003476 | 2B (P2-B) | 997 | 1091 | 0 | 0 | 95 | |
| SPA003477 | 2A (P2-A) | 855 | 996 | 0 | 0 | 142 | |
| SPA003478 | 1D (VP1) | 570 | 854 | 0 | 0 | 285 | |
| SPA003479 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA003480 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA003481 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003482 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003483 | CDS | 1 | 2151 | 0 | 0 | 2151 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |