| RVdb StrainID | ANS07218 | GenBank Accession | JN621241.1 |
| Species | RVA | Sequence Length | 7090 nt |
| Serotype | 49 Checked by RVdb | Serotype (GenBank) | 49 |
| Definition | Human rhinovirus A strain HRV-A49_p1014_sR2551_2008 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A49_p1014_sR2551_2008 | Sampling Date | 2008-09-13 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029916 | 1A (VP4) | 569 | 775 | 0 | 0 | 207 | |
| SQA029917 | 1B (VP2) | 776 | 1558 | 0 | 0 | 783 | |
| SQA029918 | 1C (VP3) | 1559 | 2269 | 0 | 0 | 711 | |
| SQA029919 | 1D (VP1) | 2270 | 3118 | 0 | 0 | 849 | |
| SQA029920 | 2A (P2-A) | 3119 | 3544 | 0 | 0 | 426 | |
| SQA029921 | 2B (P2-B) | 3545 | 3829 | 0 | 0 | 285 | |
| SQA029922 | 2C (P2-C) | 3830 | 4795 | 0 | 0 | 966 | |
| SQA029923 | 3'UTR | 7022 | 7062 | 0 | 0 | 41 | |
| SQA029924 | 3A (P3-A) | 4796 | 5026 | 0 | 0 | 231 | |
| SQA029925 | 3B (VPg) | 5027 | 5089 | 0 | 0 | 63 | |
| SQA029926 | protease 3C | 5090 | 5638 | 0 | 0 | 549 | |
| SQA029927 | 3D | 5639 | 7018 | 0 | 0 | 1380 | |
| SQA029928 | 5'UTR | 1 | 568 | 1 | 0 | 568 | |
| SQA029929 | CDS | 569 | 7021 | 0 | 0 | 6453 | |
| SQA029930 | VP4/2 | 569 | 1003 | 0 | 0 | 435 | |
| SQA029931 | genome | 1 | 7090 | 1 | 0 | 7090 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003536 | protease 3C | 1508 | 1690 | 0 | 0 | 183 | |
| SPA003537 | 3D | 1691 | 2150 | 0 | 0 | 460 | |
| SPA003538 | 3B (VPg) | 1487 | 1507 | 0 | 0 | 21 | |
| SPA003539 | 3A (P3-A) | 1410 | 1486 | 0 | 0 | 77 | |
| SPA003540 | 2C (P2-C) | 1088 | 1409 | 0 | 0 | 322 | |
| SPA003541 | 2B (P2-B) | 993 | 1087 | 0 | 0 | 95 | |
| SPA003542 | 2A (P2-A) | 851 | 992 | 0 | 0 | 142 | |
| SPA003543 | 1D (VP1) | 568 | 850 | 0 | 0 | 283 | |
| SPA003544 | 1C (VP3) | 331 | 567 | 0 | 0 | 237 | |
| SPA003545 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA003546 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003547 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003548 | CDS | 1 | 2150 | 0 | 0 | 2150 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |