| RVdb StrainID | ANS07173 | GenBank Accession | JN798560.1 |
| Species | RVA | Sequence Length | 7013 nt |
| Serotype | 61 Checked by RVdb | Serotype (GenBank) | 61 |
| Definition | Human rhinovirus A strain HRV-A61_p014_sT396_2007 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A61_p014_sT396_2007 | Sampling Date | 2007 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029878 | 1A (VP4) | 546 | 752 | 0 | 0 | 207 | |
| SQA029879 | 1B (VP2) | 753 | 1535 | 0 | 0 | 783 | |
| SQA029880 | 1C (VP3) | 1536 | 2249 | 0 | 0 | 714 | |
| SQA029881 | 1D (VP1) | 2250 | 3125 | 0 | 0 | 876 | |
| SQA029882 | 2A (P2-A) | 3126 | 3500 | 0 | 1 | 375 | |
| SQA029883 | 2B (P2-B) | 3600 | 3836 | 1 | 0 | 237 | |
| SQA029884 | 2C (P2-C) | 3837 | 4802 | 0 | 0 | 966 | |
| SQA029885 | 3A (P3-A) | 4803 | 5033 | 0 | 0 | 231 | |
| SQA029886 | 3B (VPg) | 5034 | 5096 | 0 | 0 | 63 | |
| SQA029887 | protease 3C | 5097 | 5645 | 0 | 0 | 549 | |
| SQA029888 | 3D | 5646 | 7013 | 0 | 1 | 1368 | |
| SQA029889 | 5'UTR | 1 | 545 | 1 | 0 | 545 | |
| SQA029890 | CDS | 546 | 7013 | 0 | 1 | 6468 | |
| SQA029891 | VP4/2 | 546 | 980 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003640 | protease 3C | 1518 | 1700 | 0 | 0 | 183 | |
| SPA003641 | 3D | 1701 | 2156 | 0 | 1 | 456 | |
| SPA003642 | 3B (VPg) | 1497 | 1517 | 0 | 0 | 21 | |
| SPA003643 | 3A (P3-A) | 1420 | 1496 | 0 | 0 | 77 | |
| SPA003644 | 2C (P2-C) | 1098 | 1419 | 0 | 0 | 322 | |
| SPA003645 | 2B (P2-B) | 1019 | 1097 | 1 | 0 | 79 | |
| SPA003646 | 2A (P2-A) | 861 | 985 | 0 | 1 | 125 | |
| SPA003647 | 1D (VP1) | 569 | 860 | 0 | 0 | 292 | |
| SPA003648 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA003649 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA003650 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003651 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003652 | CDS | 1 | 2156 | 0 | 0 | 2156 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |