| RVdb StrainID | ANS07168 | GenBank Accession | JN798574.1 |
| Species | RVA | Sequence Length | 7003 nt |
| Serotype | 16 Checked by RVdb | Serotype (GenBank) | 16 |
| Definition | Human rhinovirus A strain HRV-A16_p1172_sR1217_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A16_p1172_sR1217_2009 | Sampling Date | 2009-04-25 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029864 | 1A (VP4) | 548 | 754 | 0 | 0 | 207 | |
| SQA029865 | 1B (VP2) | 755 | 1537 | 0 | 0 | 783 | |
| SQA029866 | 1C (VP3) | 1538 | 2251 | 0 | 0 | 714 | |
| SQA029867 | 1D (VP1) | 2252 | 3133 | 0 | 0 | 882 | |
| SQA029868 | 2A (P2-A) | 3155 | 3532 | 1 | 0 | 378 | |
| SQA029869 | 2B (P2-B) | 3533 | 3817 | 0 | 0 | 285 | |
| SQA029870 | 2C (P2-C) | 3818 | 4783 | 0 | 0 | 966 | |
| SQA029871 | 3A (P3-A) | 4784 | 5014 | 0 | 0 | 231 | |
| SQA029872 | 3B (VPg) | 5015 | 5077 | 0 | 0 | 63 | |
| SQA029873 | protease 3C | 5078 | 5626 | 0 | 0 | 549 | |
| SQA029874 | 3D | 5627 | 7003 | 0 | 1 | 1377 | |
| SQA029875 | 5'UTR | 1 | 547 | 1 | 0 | 547 | |
| SQA029876 | CDS | 548 | 7003 | 0 | 1 | 6456 | |
| SQA029877 | VP4/2 | 548 | 982 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003705 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA003706 | 3D | 1694 | 2152 | 0 | 1 | 459 | |
| SPA003707 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA003708 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA003709 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA003710 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA003711 | 2A (P2-A) | 870 | 995 | 1 | 0 | 126 | |
| SPA003712 | 1D (VP1) | 569 | 862 | 0 | 0 | 294 | |
| SPA003713 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA003714 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA003715 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003716 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003717 | CDS | 1 | 2152 | 0 | 0 | 2152 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |