| RVdb StrainID | ANS07163 | GenBank Accession | JN798579.1 |
| Species | RVA | Sequence Length | 6815 nt |
| Serotype | 40 Checked by RVdb | Serotype (GenBank) | 40 |
| Definition | Human rhinovirus A strain HRV-A40_p1189_sR1273_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A40_p1189_sR1273_2009 | Sampling Date | 2009-09-26 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029850 | 1A (VP4) | 528 | 734 | 0 | 0 | 207 | |
| SQA029851 | 1B (VP2) | 735 | 1532 | 0 | 0 | 798 | |
| SQA029852 | 1C (VP3) | 1533 | 2246 | 0 | 0 | 714 | |
| SQA029853 | 1D (VP1) | 2247 | 3104 | 0 | 0 | 858 | |
| SQA029854 | 2A (P2-A) | 3105 | 3530 | 0 | 0 | 426 | |
| SQA029855 | 2B (P2-B) | 3531 | 3815 | 0 | 0 | 285 | |
| SQA029856 | 2C (P2-C) | 3816 | 4781 | 0 | 0 | 966 | |
| SQA029857 | 3A (P3-A) | 4782 | 5012 | 0 | 0 | 231 | |
| SQA029858 | 3B (VPg) | 5013 | 5075 | 0 | 0 | 63 | |
| SQA029859 | protease 3C | 5076 | 5624 | 0 | 0 | 549 | |
| SQA029860 | 3D | 5625 | 6815 | 0 | 1 | 1191 | |
| SQA029861 | 5'UTR | 1 | 527 | 1 | 0 | 527 | |
| SQA029862 | CDS | 528 | 6815 | 0 | 1 | 6288 | |
| SQA029863 | VP4/2 | 528 | 962 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003770 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA003771 | 3D | 1700 | 2096 | 0 | 1 | 397 | |
| SPA003772 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA003773 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA003774 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA003775 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA003776 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
| SPA003777 | 1D (VP1) | 574 | 859 | 0 | 0 | 286 | |
| SPA003778 | 1C (VP3) | 336 | 573 | 0 | 0 | 238 | |
| SPA003779 | 1B (VP2) | 70 | 335 | 0 | 0 | 266 | |
| SPA003780 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003781 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003782 | CDS | 1 | 2096 | 0 | 0 | 2096 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |