| RVdb StrainID | ANS07158 | GenBank Accession | JN798585.1 |
| Species | RVA | Sequence Length | 6586 nt |
| Serotype | 82 Checked by RVdb | Serotype (GenBank) | 82 |
| Definition | Human rhinovirus A strain HRV-A82_p1128_sR3279_2010 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A82_p1128_sR3279_2010 | Sampling Date | 2010-01-05 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029836 | 1A (VP4) | 511 | 717 | 0 | 0 | 207 | |
| SQA029837 | 1B (VP2) | 718 | 1497 | 0 | 0 | 780 | |
| SQA029838 | 1C (VP3) | 1498 | 2208 | 0 | 0 | 711 | |
| SQA029839 | 1D (VP1) | 2209 | 3075 | 0 | 0 | 867 | |
| SQA029840 | 2A (P2-A) | 3076 | 3501 | 0 | 0 | 426 | |
| SQA029841 | 2B (P2-B) | 3502 | 3786 | 0 | 0 | 285 | |
| SQA029842 | 2C (P2-C) | 3787 | 4752 | 0 | 0 | 966 | |
| SQA029843 | 3A (P3-A) | 4753 | 4983 | 0 | 0 | 231 | |
| SQA029844 | 3B (VPg) | 4984 | 5046 | 0 | 0 | 63 | |
| SQA029845 | protease 3C | 5047 | 5595 | 0 | 0 | 549 | |
| SQA029846 | 3D | 5596 | 6586 | 0 | 1 | 991 | |
| SQA029847 | 5'UTR | 1 | 510 | 1 | 0 | 510 | |
| SQA029848 | CDS | 511 | 6586 | 0 | 1 | 6076 | |
| SQA029849 | VP4/2 | 511 | 945 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003835 | protease 3C | 1513 | 1695 | 0 | 0 | 183 | |
| SPA003836 | 3D | 1696 | 2025 | 0 | 1 | 330 | |
| SPA003837 | 3B (VPg) | 1492 | 1512 | 0 | 0 | 21 | |
| SPA003838 | 3A (P3-A) | 1415 | 1491 | 0 | 0 | 77 | |
| SPA003839 | 2C (P2-C) | 1093 | 1414 | 0 | 0 | 322 | |
| SPA003840 | 2B (P2-B) | 998 | 1092 | 0 | 0 | 95 | |
| SPA003841 | 2A (P2-A) | 856 | 997 | 0 | 0 | 142 | |
| SPA003842 | 1D (VP1) | 567 | 855 | 0 | 0 | 289 | |
| SPA003843 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPA003844 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPA003845 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003846 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003847 | CDS | 1 | 2025 | 0 | 0 | 2025 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |