| RVdb StrainID | ANS07153 | GenBank Accession | JN815237.1 |
| Species | RVA | Sequence Length | 7051 nt |
| Serotype | 43 Checked by RVdb | Serotype (GenBank) | 43 |
| Definition | Human rhinovirus A strain HRV-A43_p1224_sR3080_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A43_p1224_sR3080_2008 | Sampling Date | 2008-09-20 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029822 | 1A (VP4) | 582 | 788 | 0 | 0 | 207 | |
| SQA029823 | 1B (VP2) | 789 | 1577 | 0 | 0 | 789 | |
| SQA029824 | 1C (VP3) | 1578 | 2291 | 0 | 0 | 714 | |
| SQA029825 | 1D (VP1) | 2292 | 3158 | 0 | 0 | 867 | |
| SQA029826 | 2A (P2-A) | 3159 | 3584 | 0 | 0 | 426 | |
| SQA029827 | 2B (P2-B) | 3585 | 3869 | 0 | 0 | 285 | |
| SQA029828 | 2C (P2-C) | 3870 | 4835 | 0 | 0 | 966 | |
| SQA029829 | 3A (P3-A) | 4836 | 5066 | 0 | 0 | 231 | |
| SQA029830 | 3B (VPg) | 5067 | 5129 | 0 | 0 | 63 | |
| SQA029831 | protease 3C | 5130 | 5678 | 0 | 0 | 549 | |
| SQA029832 | 3D | 5679 | 7051 | 0 | 1 | 1373 | |
| SQA029833 | 5'UTR | 1 | 581 | 1 | 0 | 581 | |
| SQA029834 | CDS | 582 | 7051 | 0 | 1 | 6470 | |
| SQA029835 | VP4/2 | 582 | 1016 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003978 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA003979 | 3D | 1700 | 2157 | 0 | 1 | 458 | |
| SPA003980 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA003981 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA003982 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA003983 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA003984 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
| SPA003985 | 1D (VP1) | 571 | 859 | 0 | 0 | 289 | |
| SPA003986 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA003987 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA003988 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003989 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003990 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |