| RVdb StrainID | ANS07148 | GenBank Accession | JN815247.1 |
| Species | RVA | Sequence Length | 6768 nt |
| Serotype | 10 Checked by RVdb | Serotype (GenBank) | 10 |
| Definition | Human rhinovirus A strain HRV-A10_p1205_sR3204_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A10_p1205_sR3204_2009 | Sampling Date | 2009-04-18 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029808 | 1A (VP4) | 500 | 706 | 0 | 0 | 207 | |
| SQA029809 | 1B (VP2) | 707 | 1501 | 0 | 0 | 795 | |
| SQA029810 | 1C (VP3) | 1502 | 2215 | 0 | 0 | 714 | |
| SQA029811 | 1D (VP1) | 2216 | 3079 | 0 | 0 | 864 | |
| SQA029812 | 2A (P2-A) | 3080 | 3505 | 0 | 0 | 426 | |
| SQA029813 | 2B (P2-B) | 3506 | 3790 | 0 | 0 | 285 | |
| SQA029814 | 2C (P2-C) | 3791 | 4756 | 0 | 0 | 966 | |
| SQA029815 | 3A (P3-A) | 4757 | 4987 | 0 | 0 | 231 | |
| SQA029816 | 3B (VPg) | 4988 | 5050 | 0 | 0 | 63 | |
| SQA029817 | protease 3C | 5051 | 5599 | 0 | 0 | 549 | |
| SQA029818 | 3D | 5600 | 6768 | 0 | 1 | 1169 | |
| SQA029819 | 5'UTR | 1 | 499 | 1 | 0 | 499 | |
| SQA029820 | CDS | 500 | 6768 | 0 | 1 | 6269 | |
| SQA029821 | VP4/2 | 500 | 934 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004043 | protease 3C | 1518 | 1700 | 0 | 0 | 183 | |
| SPA004044 | 3D | 1701 | 2090 | 0 | 1 | 390 | |
| SPA004045 | 3B (VPg) | 1497 | 1517 | 0 | 0 | 21 | |
| SPA004046 | 3A (P3-A) | 1420 | 1496 | 0 | 0 | 77 | |
| SPA004047 | 2C (P2-C) | 1098 | 1419 | 0 | 0 | 322 | |
| SPA004048 | 2B (P2-B) | 1003 | 1097 | 0 | 0 | 95 | |
| SPA004049 | 2A (P2-A) | 861 | 1002 | 0 | 0 | 142 | |
| SPA004050 | 1D (VP1) | 573 | 860 | 0 | 0 | 288 | |
| SPA004051 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA004052 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA004053 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004054 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004055 | CDS | 1 | 2090 | 0 | 0 | 2090 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |