| RVdb StrainID | ANS07143 | GenBank Accession | JN815255.1 |
| Species | RVA | Sequence Length | 6852 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Human rhinovirus A strain HRV-A01_p1103_sR1167_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A01_p1103_sR1167_2009 | Sampling Date | 2009-11-04 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029794 | 1A (VP4) | 543 | 749 | 0 | 0 | 207 | |
| SQA029795 | 1B (VP2) | 750 | 1538 | 0 | 0 | 789 | |
| SQA029796 | 1C (VP3) | 1539 | 2252 | 0 | 0 | 714 | |
| SQA029797 | 1D (VP1) | 2253 | 3113 | 0 | 0 | 861 | |
| SQA029798 | 2A (P2-A) | 3114 | 3539 | 0 | 0 | 426 | |
| SQA029799 | 2B (P2-B) | 3540 | 3824 | 0 | 0 | 285 | |
| SQA029800 | 2C (P2-C) | 3825 | 4790 | 0 | 0 | 966 | |
| SQA029801 | 3A (P3-A) | 4791 | 5021 | 0 | 0 | 231 | |
| SQA029802 | 3B (VPg) | 5022 | 5084 | 0 | 0 | 63 | |
| SQA029803 | protease 3C | 5085 | 5633 | 0 | 0 | 549 | |
| SQA029804 | 3D | 5634 | 6852 | 0 | 1 | 1219 | |
| SQA029805 | 5'UTR | 1 | 542 | 1 | 0 | 542 | |
| SQA029806 | CDS | 543 | 6852 | 0 | 1 | 6310 | |
| SQA029807 | VP4/2 | 543 | 977 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004108 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA004109 | 3D | 1698 | 2103 | 0 | 1 | 406 | |
| SPA004110 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA004111 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA004112 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA004113 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA004114 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA004115 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA004116 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA004117 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA004118 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004119 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004120 | CDS | 1 | 2103 | 0 | 0 | 2103 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |