| RVdb StrainID | ANS07138 | GenBank Accession | JN837696.1 |
| Species | RVA | Sequence Length | 7000 nt |
| Serotype | 23 Checked by RVdb | Serotype (GenBank) | 23 |
| Definition | Human rhinovirus A strain HRV-A23_p1216_sR3071_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A23_p1216_sR3071_2008 | Sampling Date | 2008-09-27 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029780 | 1A (VP4) | 555 | 761 | 0 | 0 | 207 | |
| SQA029781 | 1B (VP2) | 762 | 1544 | 0 | 0 | 783 | |
| SQA029782 | 1C (VP3) | 1545 | 2252 | 0 | 0 | 708 | |
| SQA029783 | 1D (VP1) | 2253 | 3101 | 0 | 0 | 849 | |
| SQA029784 | 2A (P2-A) | 3102 | 3527 | 0 | 0 | 426 | |
| SQA029785 | 2B (P2-B) | 3528 | 3812 | 0 | 0 | 285 | |
| SQA029786 | 2C (P2-C) | 3813 | 4778 | 0 | 0 | 966 | |
| SQA029787 | 3A (P3-A) | 4779 | 5009 | 0 | 0 | 231 | |
| SQA029788 | 3B (VPg) | 5010 | 5072 | 0 | 0 | 63 | |
| SQA029789 | protease 3C | 5073 | 5621 | 0 | 0 | 549 | |
| SQA029790 | 3D | 5622 | 7000 | 0 | 1 | 1379 | |
| SQA029791 | 5'UTR | 1 | 554 | 1 | 0 | 554 | |
| SQA029792 | CDS | 555 | 7000 | 0 | 1 | 6446 | |
| SQA029793 | VP4/2 | 555 | 989 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003952 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPA003953 | 3D | 1690 | 2149 | 0 | 1 | 460 | |
| SPA003954 | 3B (VPg) | 1486 | 1506 | 0 | 0 | 21 | |
| SPA003955 | 3A (P3-A) | 1409 | 1485 | 0 | 0 | 77 | |
| SPA003956 | 2C (P2-C) | 1087 | 1408 | 0 | 0 | 322 | |
| SPA003957 | 2B (P2-B) | 992 | 1086 | 0 | 0 | 95 | |
| SPA003958 | 2A (P2-A) | 850 | 991 | 0 | 0 | 142 | |
| SPA003959 | 1D (VP1) | 567 | 849 | 0 | 0 | 283 | |
| SPA003960 | 1C (VP3) | 331 | 566 | 0 | 0 | 236 | |
| SPA003961 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA003962 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003963 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003964 | CDS | 1 | 2149 | 0 | 0 | 2149 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |