| RVdb StrainID | ANS06928 | GenBank Accession | JN990699.1 |
| Species | RVA | Sequence Length | 6512 nt |
| Serotype | 105 Corrected by RVdb | Serotype (GenBank) | 57 |
| Definition | Human rhinovirus A strain HRV-A57_p1105_sR2804_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A57_p1105_sR2804_2008 | Sampling Date | 2008 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029645 | 1A (VP4) | 386 | 592 | 0 | 0 | 207 | |
| SQA029646 | 1B (VP2) | 593 | 1375 | 0 | 0 | 783 | |
| SQA029647 | 1C (VP3) | 1376 | 2089 | 0 | 0 | 714 | |
| SQA029648 | 1D (VP1) | 2090 | 2953 | 0 | 0 | 864 | |
| SQA029649 | 2A (P2-A) | 2954 | 3379 | 0 | 0 | 426 | |
| SQA029650 | 2B (P2-B) | 3380 | 3664 | 0 | 0 | 285 | |
| SQA029651 | 2C (P2-C) | 3665 | 4630 | 0 | 0 | 966 | |
| SQA029652 | 3A (P3-A) | 4631 | 4861 | 0 | 0 | 231 | |
| SQA029653 | 3B (VPg) | 4862 | 4924 | 0 | 0 | 63 | |
| SQA029654 | protease 3C | 4925 | 5473 | 0 | 0 | 549 | |
| SQA029655 | 3D | 5474 | 6512 | 0 | 1 | 1039 | |
| SQA029656 | 5'UTR | 1 | 385 | 1 | 0 | 385 | |
| SQA029657 | CDS | 386 | 6512 | 0 | 1 | 6127 | |
| SQA029658 | VP4/2 | 386 | 820 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004121 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
| SPA004122 | 3D | 1697 | 2042 | 0 | 1 | 346 | |
| SPA004123 | 3B (VPg) | 1493 | 1513 | 0 | 0 | 21 | |
| SPA004124 | 3A (P3-A) | 1416 | 1492 | 0 | 0 | 77 | |
| SPA004125 | 2C (P2-C) | 1094 | 1415 | 0 | 0 | 322 | |
| SPA004126 | 2B (P2-B) | 999 | 1093 | 0 | 0 | 95 | |
| SPA004127 | 2A (P2-A) | 857 | 998 | 0 | 0 | 142 | |
| SPA004128 | 1D (VP1) | 569 | 856 | 0 | 0 | 288 | |
| SPA004129 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA004130 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA004131 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004132 | CDS | 1 | 2042 | 0 | 0 | 2042 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |