| RVdb StrainID | ANS06908 | GenBank Accession | JQ245971.1 |
| Species | RVA | Sequence Length | 7127 nt |
| Serotype | 106 Checked by RVdb | Serotype (GenBank) | 106 |
| Definition | Rhinovirus A106 strain HRV-A71_p1044_sR114_2008 polyprotein gene, partial cds | GenBank Submission Date | 2020-10-16 |
| Strain Name | HRV-A71_p1044_sR114_2008 | Sampling Date | 2008 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 2777144 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029628 | 1A (VP4) | 640 | 846 | 0 | 0 | 207 | |
| SQA029629 | 1B (VP2) | 847 | 1632 | 0 | 0 | 786 | |
| SQA029630 | 1C (VP3) | 1633 | 2346 | 0 | 0 | 714 | |
| SQA029631 | 1D (VP1) | 2347 | 3231 | 0 | 0 | 885 | |
| SQA029632 | 2A (P2-A) | 3232 | 3660 | 0 | 0 | 429 | |
| SQA029633 | 2B (P2-B) | 3661 | 3945 | 0 | 0 | 285 | |
| SQA029634 | 2C (P2-C) | 3946 | 4842 | 0 | 1 | 897 | |
| SQA029635 | 3A (P3-A) | 5113 | 5142 | 1 | 0 | 30 | |
| SQA029636 | 3B (VPg) | 5143 | 5205 | 0 | 0 | 63 | |
| SQA029637 | protease 3C | 5206 | 5754 | 0 | 0 | 549 | |
| SQA029638 | 3D | 5755 | 7127 | 0 | 1 | 1373 | |
| SQA029639 | 5'UTR | 21 | 639 | 0 | 0 | 619 | |
| SQA029640 | CDS | 640 | 7127 | 0 | 1 | 6488 | |
| SQA029641 | VP4/2 | 640 | 1074 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004873 | protease 3C | 1523 | 1705 | 0 | 0 | 183 | |
| SPA004874 | 3D | 1706 | 2162 | 0 | 1 | 457 | |
| SPA004875 | 3B (VPg) | 1502 | 1522 | 0 | 0 | 21 | |
| SPA004876 | 3A (P3-A) | 1492 | 1501 | 1 | 0 | 10 | |
| SPA004877 | 2C (P2-C) | 1103 | 1401 | 0 | 1 | 299 | |
| SPA004878 | 2B (P2-B) | 1008 | 1102 | 0 | 0 | 95 | |
| SPA004879 | 2A (P2-A) | 865 | 1007 | 0 | 0 | 143 | |
| SPA004880 | 1D (VP1) | 570 | 864 | 0 | 0 | 295 | |
| SPA004881 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA004882 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA004883 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004884 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004885 | CDS | 1 | 2162 | 0 | 0 | 2162 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |