| RVdb StrainID | ANS06818 | GenBank Accession | JQ747746.1 |
| Species | RVA | Sequence Length | 6982 nt |
| Serotype | 19 Checked by RVdb | Serotype (GenBank) | 19 |
| Definition | Human rhinovirus A strain HRV-A19_p1293_s3944_2000 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A19_p1293_s3944_2000 | Sampling Date | 2000 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029593 | 1A (VP4) | 520 | 726 | 0 | 0 | 207 | |
| SQA029594 | 1B (VP2) | 727 | 1509 | 0 | 0 | 783 | |
| SQA029595 | 1C (VP3) | 1510 | 2223 | 0 | 0 | 714 | |
| SQA029596 | 1D (VP1) | 2224 | 3093 | 0 | 0 | 870 | |
| SQA029597 | 2A (P2-A) | 3094 | 3519 | 0 | 0 | 426 | |
| SQA029598 | 2B (P2-B) | 3520 | 3804 | 0 | 0 | 285 | |
| SQA029599 | 2C (P2-C) | 3805 | 4770 | 0 | 0 | 966 | |
| SQA029600 | 3A (P3-A) | 4771 | 5001 | 0 | 0 | 231 | |
| SQA029601 | 3B (VPg) | 5002 | 5064 | 0 | 0 | 63 | |
| SQA029602 | protease 3C | 5065 | 5613 | 0 | 0 | 549 | |
| SQA029603 | 3D | 5614 | 6982 | 0 | 1 | 1369 | |
| SQA029604 | 5'UTR | 1 | 519 | 1 | 0 | 519 | |
| SQA029605 | CDS | 520 | 6982 | 0 | 1 | 6463 | |
| SQA029606 | VP4/2 | 520 | 954 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004769 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA004770 | 3D | 1699 | 2154 | 0 | 1 | 456 | |
| SPA004771 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA004772 | 3A (P3-A) | 1418 | 1494 | 0 | 0 | 77 | |
| SPA004773 | 2C (P2-C) | 1096 | 1417 | 0 | 0 | 322 | |
| SPA004774 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA004775 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
| SPA004776 | 1D (VP1) | 569 | 858 | 0 | 0 | 290 | |
| SPA004777 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA004778 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA004779 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004780 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004781 | CDS | 1 | 2154 | 0 | 0 | 2154 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |