| RVdb StrainID | ANS06813 | GenBank Accession | JQ837715.1 |
| Species | RVA | Sequence Length | 6929 nt |
| Serotype | 66 Checked by RVdb | Serotype (GenBank) | 66 |
| Definition | Human rhinovirus A strain HRV-A66_p1039_sR175_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A66_p1039_sR175_2008 | Sampling Date | 2008 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029579 | 1A (VP4) | 471 | 677 | 0 | 0 | 207 | |
| SQA029580 | 1B (VP2) | 678 | 1466 | 0 | 0 | 789 | |
| SQA029581 | 1C (VP3) | 1467 | 2180 | 0 | 0 | 714 | |
| SQA029582 | 1D (VP1) | 2181 | 3044 | 0 | 0 | 864 | |
| SQA029583 | 2A (P2-A) | 3045 | 3470 | 0 | 0 | 426 | |
| SQA029584 | 2B (P2-B) | 3471 | 3755 | 0 | 0 | 285 | |
| SQA029585 | 2C (P2-C) | 3756 | 4730 | 0 | 0 | 975 | |
| SQA029586 | 3A (P3-A) | 4731 | 4961 | 0 | 0 | 231 | |
| SQA029587 | 3B (VPg) | 4962 | 5024 | 0 | 0 | 63 | |
| SQA029588 | protease 3C | 5025 | 5573 | 0 | 0 | 549 | |
| SQA029589 | 3D | 5574 | 6929 | 0 | 1 | 1356 | |
| SQA029590 | 5'UTR | 1 | 470 | 1 | 0 | 470 | |
| SQA029591 | CDS | 471 | 6929 | 0 | 1 | 6459 | |
| SQA029592 | VP4/2 | 471 | 905 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004922 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA004923 | 3D | 1702 | 2153 | 0 | 1 | 452 | |
| SPA004924 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 | |
| SPA004925 | 3A (P3-A) | 1421 | 1497 | 0 | 0 | 77 | |
| SPA004926 | 2C (P2-C) | 1096 | 1420 | 0 | 0 | 325 | |
| SPA004927 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA004928 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
| SPA004929 | 1D (VP1) | 571 | 858 | 0 | 0 | 288 | |
| SPA004930 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA004931 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA004932 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004933 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004934 | CDS | 1 | 2153 | 0 | 0 | 2153 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |