| RVdb StrainID | ANS06808 | GenBank Accession | JQ837724.1 |
| Species | RVA | Sequence Length | 7035 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Human rhinovirus A strain HRV-A01_p1143_sR2058_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A01_p1143_sR2058_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.07 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029565 | 1A (VP4) | 575 | 781 | 0 | 0 | 207 | |
| SQA029566 | 1B (VP2) | 782 | 1570 | 0 | 0 | 789 | |
| SQA029567 | 1C (VP3) | 1571 | 2284 | 0 | 0 | 714 | |
| SQA029568 | 1D (VP1) | 2285 | 3145 | 0 | 0 | 861 | |
| SQA029569 | 2A (P2-A) | 3146 | 3571 | 0 | 0 | 426 | |
| SQA029570 | 2B (P2-B) | 3572 | 3856 | 0 | 0 | 285 | |
| SQA029571 | 2C (P2-C) | 3857 | 4822 | 0 | 0 | 966 | |
| SQA029572 | 3A (P3-A) | 4823 | 5053 | 0 | 0 | 231 | |
| SQA029573 | 3B (VPg) | 5054 | 5116 | 0 | 0 | 63 | |
| SQA029574 | protease 3C | 5117 | 5665 | 0 | 0 | 549 | |
| SQA029575 | 3D | 5666 | 7035 | 0 | 1 | 1370 | |
| SQA029576 | 5'UTR | 1 | 574 | 1 | 0 | 574 | |
| SQA029577 | CDS | 575 | 7035 | 0 | 1 | 6461 | |
| SQA029578 | VP4/2 | 575 | 1009 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004987 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA004988 | 3D | 1698 | 2153 | 0 | 1 | 456 | |
| SPA004989 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA004990 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA004991 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA004992 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA004993 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA004994 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA004995 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA004996 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA004997 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004998 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004999 | CDS | 1 | 2153 | 0 | 0 | 2153 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |