| RVdb StrainID | ANS06803 | GenBank Accession | JQ994499.1 |
| Species | RVA | Sequence Length | 6837 nt |
| Serotype | 103 Checked by RVdb | Serotype (GenBank) | 103 |
| Definition | Human rhinovirus A strain HRV-A103_p1102_sR884_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A103_p1102_sR884_2008 | Sampling Date | 2008 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029551 | 1A (VP4) | 349 | 555 | 0 | 0 | 207 | |
| SQA029552 | 1B (VP2) | 556 | 1341 | 0 | 0 | 786 | |
| SQA029553 | 1C (VP3) | 1342 | 2058 | 0 | 0 | 717 | |
| SQA029554 | 1D (VP1) | 2059 | 2949 | 0 | 0 | 891 | |
| SQA029555 | 2A (P2-A) | 2950 | 3378 | 0 | 0 | 429 | |
| SQA029556 | 2B (P2-B) | 3379 | 3663 | 0 | 0 | 285 | |
| SQA029557 | 2C (P2-C) | 3664 | 4626 | 0 | 0 | 963 | |
| SQA029558 | 3A (P3-A) | 4627 | 4860 | 0 | 0 | 234 | |
| SQA029559 | 3B (VPg) | 4861 | 4923 | 0 | 0 | 63 | |
| SQA029560 | protease 3C | 4924 | 5478 | 0 | 0 | 555 | |
| SQA029561 | 3D | 5479 | 6837 | 0 | 1 | 1359 | |
| SQA029562 | 5'UTR | 1 | 348 | 1 | 0 | 348 | |
| SQA029563 | CDS | 349 | 6837 | 0 | 1 | 6489 | |
| SQA029564 | VP4/2 | 349 | 783 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA005026 | protease 3C | 1526 | 1710 | 0 | 0 | 185 | |
| SPA005027 | 3D | 1711 | 2163 | 0 | 1 | 453 | |
| SPA005028 | 3B (VPg) | 1505 | 1525 | 0 | 0 | 21 | |
| SPA005029 | 3A (P3-A) | 1427 | 1504 | 0 | 0 | 78 | |
| SPA005030 | 2C (P2-C) | 1106 | 1426 | 0 | 0 | 321 | |
| SPA005031 | 2B (P2-B) | 1011 | 1105 | 0 | 0 | 95 | |
| SPA005032 | 2A (P2-A) | 868 | 1010 | 0 | 0 | 143 | |
| SPA005033 | 1D (VP1) | 571 | 867 | 0 | 0 | 297 | |
| SPA005034 | 1C (VP3) | 332 | 570 | 0 | 0 | 239 | |
| SPA005035 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA005036 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA005037 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA005038 | CDS | 1 | 2163 | 0 | 0 | 2163 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |