| RVdb StrainID | ANS06798 | GenBank Accession | JX074050.1 |
| Species | RVA | Sequence Length | 7043 nt |
| Serotype | 36 Checked by RVdb | Serotype (GenBank) | 36 |
| Definition | Human rhinovirus A strain HRV-A36_p1148_sR1494_2009 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A36_p1148_sR1494_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029535 | 1A (VP4) | 535 | 741 | 0 | 0 | 207 | |
| SQA029536 | 1B (VP2) | 742 | 1542 | 0 | 0 | 801 | |
| SQA029537 | 1C (VP3) | 1543 | 1707 | 0 | 1 | 165 | |
| SQA029538 | 1D (VP1) | 2287 | 3126 | 1 | 0 | 840 | |
| SQA029539 | 2A (P2-A) | 3127 | 3549 | 0 | 0 | 423 | |
| SQA029540 | 2B (P2-B) | 3550 | 3834 | 0 | 0 | 285 | |
| SQA029541 | 2C (P2-C) | 3835 | 4797 | 0 | 0 | 963 | |
| SQA029542 | 3'UTR | 7021 | 7043 | 0 | 1 | 23 | |
| SQA029543 | 3A (P3-A) | 4798 | 5025 | 0 | 0 | 228 | |
| SQA029544 | 3B (VPg) | 5026 | 5088 | 0 | 0 | 63 | |
| SQA029545 | protease 3C | 5089 | 5637 | 0 | 0 | 549 | |
| SQA029546 | 3D | 5638 | 7017 | 0 | 0 | 1380 | |
| SQA029547 | 5'UTR | 1 | 534 | 1 | 0 | 534 | |
| SQA029548 | CDS | 535 | 7020 | 0 | 0 | 6486 | |
| SQA029549 | VP4/2 | 535 | 969 | 0 | 0 | 435 | |
| SQA029550 | genome | 1 | 7043 | 1 | 1 | 7043 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA005090 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA005091 | 3D | 1702 | 2161 | 0 | 0 | 460 | |
| SPA005092 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 | |
| SPA005093 | 3A (P3-A) | 1422 | 1497 | 0 | 0 | 76 | |
| SPA005094 | 2C (P2-C) | 1101 | 1421 | 0 | 0 | 321 | |
| SPA005095 | 2B (P2-B) | 1006 | 1100 | 0 | 0 | 95 | |
| SPA005096 | 2A (P2-A) | 865 | 1005 | 0 | 0 | 141 | |
| SPA005097 | 1D (VP1) | 585 | 864 | 1 | 0 | 280 | |
| SPA005098 | 1C (VP3) | 337 | 391 | 0 | 1 | 55 | |
| SPA005099 | 1B (VP2) | 70 | 336 | 0 | 0 | 267 | |
| SPA005100 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA005101 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA005102 | CDS | 1 | 2161 | 0 | 0 | 2161 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |