| RVdb StrainID | ANS00008 | GenBank Accession | ON989182.1 |
| Species | RVA | Sequence Length | 4768 nt |
| Serotype | 22 Checked by RVdb | Serotype (GenBank) | 22 |
| Definition | Rhinovirus A strain RV-A22-USA-Oct-2020-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-10-08 |
| Strain Name | RV-A22-USA-Oct-2020-Tempe-AZ | Sampling Date | 2020 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | influenza-like Illness | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA023518 | 1A (VP4) | 88 | 294 | 0 | 0 | 207 | |
| SQA023519 | 1B (VP2) | 295 | 1086 | 0 | 0 | 792 | |
| SQA023520 | 1C (VP3) | 1087 | 1797 | 0 | 0 | 711 | |
| SQA023521 | 1D (VP1) | 1798 | 2664 | 0 | 0 | 867 | |
| SQA023522 | 2A (P2-A) | 2665 | 3090 | 0 | 0 | 426 | |
| SQA023523 | 2B (P2-B) | 3091 | 3375 | 0 | 0 | 285 | |
| SQA023524 | 2C (P2-C) | 3376 | 4341 | 0 | 0 | 966 | |
| SQA023525 | 3A (P3-A) | 4342 | 4572 | 0 | 0 | 231 | |
| SQA023526 | 3B (VPg) | 4573 | 4635 | 0 | 0 | 63 | |
| SQA023527 | CDS | 88 | 4768 | 0 | 1 | 4681 | |
| SQA023528 | VP4/2 | 88 | 522 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA031904 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA031905 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA031906 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA031907 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA031908 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
| SPA031909 | 1D (VP1) | 571 | 859 | 0 | 0 | 289 | |
| SPA031910 | 1C (VP3) | 334 | 570 | 0 | 0 | 237 | |
| SPA031911 | 1B (VP2) | 70 | 333 | 0 | 0 | 264 | |
| SPA031912 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA031913 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA031914 | CDS | 1 | 1560 | 0 | 0 | 1560 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |