| RVdb StrainID | ANS00003 | GenBank Accession | ON989193.1 |
| Species | RVA | Sequence Length | 4588 nt |
| Serotype | 101 Checked by RVdb | Serotype (GenBank) | 101 |
| Definition | Rhinovirus A strain RV-A101-USA-Nov-2020-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-10-08 |
| Strain Name | RV-A101-USA-Nov-2020-Tempe-AZ | Sampling Date | 2020 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | individual with influenza-like illness | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA023508 | 1B (VP2) | 60 | 825 | 0 | 0 | 766 | |
| SQA023509 | 1C (VP3) | 826 | 1559 | 0 | 0 | 734 | |
| SQA023510 | 1D (VP1) | 1560 | 2426 | 0 | 0 | 867 | |
| SQA023511 | 2A (P2-A) | 2427 | 2855 | 0 | 0 | 429 | |
| SQA023512 | 2B (P2-B) | 2856 | 3140 | 0 | 0 | 285 | |
| SQA023513 | 2C (P2-C) | 3141 | 4103 | 0 | 0 | 963 | |
| SQA023514 | 3A (P3-A) | 4104 | 4337 | 0 | 0 | 234 | |
| SQA023515 | 3B (VPg) | 4338 | 4400 | 0 | 0 | 63 | |
| SQA023516 | CDS | 1 | 4588 | 1 | 1 | 4588 | |
| SQA023517 | VP4/2 | 1 | 287 | 1 | 0 | 287 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA031958 | 3B (VPg) | 1446 | 1466 | 0 | 0 | 21 | |
| SPA031959 | 3A (P3-A) | 1368 | 1445 | 0 | 0 | 78 | |
| SPA031960 | 2C (P2-C) | 1047 | 1367 | 0 | 0 | 321 | |
| SPA031961 | 2B (P2-B) | 952 | 1046 | 0 | 0 | 95 | |
| SPA031962 | 2A (P2-A) | 809 | 951 | 0 | 0 | 143 | |
| SPA031963 | 1D (VP1) | 520 | 808 | 0 | 0 | 289 | |
| SPA031964 | 1C (VP3) | 282 | 519 | 0 | 0 | 238 | |
| SPA031965 | 1B (VP2) | 20 | 281 | 0 | 0 | 262 | |
| SPA031966 | CDS | 1 | 1528 | 0 | 0 | 1528 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |