| RVdb StrainID | ANP07952 | GenBank Accession | FJ445123.1 |
| Species | RVA | Sequence Length | 7126 nt |
| Serotype | 25 Checked by RVdb | Serotype (GenBank) | 25 |
| Definition | Human rhinovirus 25 strain ATCC VR-1135, complete genome | GenBank Submission Date | 2009-04-10 |
| Strain Name | ATCC VR-1135 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 185898 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022716 | 1A (VP4) | 613 | 819 | 0 | 0 | 207 | |
| SQA022717 | 1B (VP2) | 820 | 1617 | 0 | 0 | 798 | |
| SQA022718 | 1C (VP3) | 1618 | 2331 | 0 | 0 | 714 | |
| SQA022719 | 1D (VP1) | 2332 | 3177 | 0 | 0 | 846 | |
| SQA022720 | 2A (P2-A) | 3178 | 3603 | 0 | 0 | 426 | |
| SQA022721 | 2B (P2-B) | 3604 | 3888 | 0 | 0 | 285 | |
| SQA022722 | 2C (P2-C) | 3889 | 4854 | 0 | 0 | 966 | |
| SQA022723 | 3'UTR | 7081 | 7126 | 0 | 0 | 46 | |
| SQA022724 | 3A (P3-A) | 4855 | 5085 | 0 | 0 | 231 | |
| SQA022725 | 3B (VPg) | 5086 | 5148 | 0 | 0 | 63 | |
| SQA022726 | protease 3C | 5149 | 5697 | 0 | 0 | 549 | |
| SQA022727 | 3D | 5698 | 7077 | 0 | 0 | 1380 | |
| SQA022728 | 5'UTR | 1 | 612 | 0 | 0 | 612 | |
| SQA022729 | CDS | 613 | 7080 | 0 | 0 | 6468 | |
| SQA022730 | VP4/2 | 613 | 1047 | 0 | 0 | 435 | |
| SQA022731 | genome | 1 | 7126 | 0 | 0 | 7126 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA001256 | protease 3C | 1513 | 1695 | 0 | 0 | 183 | |
| SPA001257 | 3D | 1696 | 2155 | 0 | 0 | 460 | |
| SPA001258 | 3B (VPg) | 1492 | 1512 | 0 | 0 | 21 | |
| SPA001259 | 3A (P3-A) | 1415 | 1491 | 0 | 0 | 77 | |
| SPA001260 | 2C (P2-C) | 1093 | 1414 | 0 | 0 | 322 | |
| SPA001261 | 2B (P2-B) | 998 | 1092 | 0 | 0 | 95 | |
| SPA001262 | 2A (P2-A) | 856 | 997 | 0 | 0 | 142 | |
| SPA001263 | 1D (VP1) | 574 | 855 | 0 | 0 | 282 | |
| SPA001264 | 1C (VP3) | 336 | 573 | 0 | 0 | 238 | |
| SPA001265 | 1B (VP2) | 70 | 335 | 0 | 0 | 266 | |
| SPA001266 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA001267 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA001268 | CDS | 1 | 2155 | 0 | 0 | 2155 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19213880 | Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. | 2009 | Science | View More |