| RVdb StrainID | ANP07947 | GenBank Accession | FJ445129.1 |
| Species | RVA | Sequence Length | 7138 nt |
| Serotype | 40 Checked by RVdb | Serotype (GenBank) | 40 |
| Definition | Human rhinovirus 40 strain ATCC VR-341, complete genome | GenBank Submission Date | 2009-04-10 |
| Strain Name | ATCC VR-341 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 185908 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022700 | 1A (VP4) | 613 | 819 | 0 | 0 | 207 | |
| SQA022701 | 1B (VP2) | 820 | 1617 | 0 | 0 | 798 | |
| SQA022702 | 1C (VP3) | 1618 | 2331 | 0 | 0 | 714 | |
| SQA022703 | 1D (VP1) | 2332 | 3189 | 0 | 0 | 858 | |
| SQA022704 | 2A (P2-A) | 3190 | 3615 | 0 | 0 | 426 | |
| SQA022705 | 2B (P2-B) | 3616 | 3900 | 0 | 0 | 285 | |
| SQA022706 | 2C (P2-C) | 3901 | 4866 | 0 | 0 | 966 | |
| SQA022707 | 3'UTR | 7093 | 7138 | 0 | 1 | 46 | |
| SQA022708 | 3A (P3-A) | 4867 | 5097 | 0 | 0 | 231 | |
| SQA022709 | 3B (VPg) | 5098 | 5160 | 0 | 0 | 63 | |
| SQA022710 | protease 3C | 5161 | 5709 | 0 | 0 | 549 | |
| SQA022711 | 3D | 5710 | 7089 | 0 | 0 | 1380 | |
| SQA022712 | 5'UTR | 1 | 612 | 0 | 0 | 612 | |
| SQA022713 | CDS | 613 | 7092 | 0 | 0 | 6480 | |
| SQA022714 | VP4/2 | 613 | 1047 | 0 | 0 | 435 | |
| SQA022715 | genome | 1 | 7138 | 0 | 1 | 7138 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA001321 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA001322 | 3D | 1700 | 2159 | 0 | 0 | 460 | |
| SPA001323 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA001324 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA001325 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA001326 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA001327 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
| SPA001328 | 1D (VP1) | 574 | 859 | 0 | 0 | 286 | |
| SPA001329 | 1C (VP3) | 336 | 573 | 0 | 0 | 238 | |
| SPA001330 | 1B (VP2) | 70 | 335 | 0 | 0 | 266 | |
| SPA001331 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA001332 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA001333 | CDS | 1 | 2159 | 0 | 0 | 2159 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19213880 | Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. | 2009 | Science | View More |