| RVdb StrainID | ANP07942 | GenBank Accession | FJ445135.1 |
| Species | RVA | Sequence Length | 7118 nt |
| Serotype | 50 Checked by RVdb | Serotype (GenBank) | 50 |
| Definition | Human rhinovirus 50 strain ATCC VR-517, complete genome | GenBank Submission Date | 2009-04-10 |
| Strain Name | ATCC VR-517 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 44132 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022684 | 1A (VP4) | 611 | 817 | 0 | 0 | 207 | |
| SQA022685 | 1B (VP2) | 818 | 1594 | 0 | 0 | 777 | |
| SQA022686 | 1C (VP3) | 1595 | 2308 | 0 | 0 | 714 | |
| SQA022687 | 1D (VP1) | 2309 | 3169 | 0 | 0 | 861 | |
| SQA022688 | 2A (P2-A) | 3170 | 3595 | 0 | 0 | 426 | |
| SQA022689 | 2B (P2-B) | 3596 | 3880 | 0 | 0 | 285 | |
| SQA022690 | 2C (P2-C) | 3881 | 4846 | 0 | 0 | 966 | |
| SQA022691 | 3'UTR | 7073 | 7118 | 0 | 0 | 46 | |
| SQA022692 | 3A (P3-A) | 4847 | 5077 | 0 | 0 | 231 | |
| SQA022693 | 3B (VPg) | 5078 | 5140 | 0 | 0 | 63 | |
| SQA022694 | protease 3C | 5141 | 5689 | 0 | 0 | 549 | |
| SQA022695 | 3D | 5690 | 7069 | 0 | 0 | 1380 | |
| SQA022696 | 5'UTR | 1 | 610 | 0 | 0 | 610 | |
| SQA022697 | CDS | 611 | 7072 | 0 | 0 | 6462 | |
| SQA022698 | VP4/2 | 611 | 1045 | 0 | 0 | 435 | |
| SQA022699 | genome | 1 | 7118 | 0 | 0 | 7118 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA001386 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA001387 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPA001388 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA001389 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA001390 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA001391 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA001392 | 2A (P2-A) | 854 | 995 | 0 | 0 | 142 | |
| SPA001393 | 1D (VP1) | 567 | 853 | 0 | 0 | 287 | |
| SPA001394 | 1C (VP3) | 329 | 566 | 0 | 0 | 238 | |
| SPA001395 | 1B (VP2) | 70 | 328 | 0 | 0 | 259 | |
| SPA001396 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA001397 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA001398 | CDS | 1 | 2153 | 0 | 0 | 2153 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19213880 | Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. | 2009 | Science | View More |