| RVdb StrainID | ANP07927 | GenBank Accession | FJ445152.1 |
| Species | RVA | Sequence Length | 7161 nt |
| Serotype | 71 Checked by RVdb | Serotype (GenBank) | 71 |
| Definition | Human rhinovirus 71 strain ATCC VR-1181, complete genome | GenBank Submission Date | 2009-04-10 |
| Strain Name | ATCC VR-1181 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 185927 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022636 | 1A (VP4) | 626 | 832 | 0 | 0 | 207 | |
| SQA022637 | 1B (VP2) | 833 | 1618 | 0 | 0 | 786 | |
| SQA022638 | 1C (VP3) | 1619 | 2332 | 0 | 0 | 714 | |
| SQA022639 | 1D (VP1) | 2333 | 3217 | 0 | 0 | 885 | |
| SQA022640 | 2A (P2-A) | 3218 | 3646 | 0 | 0 | 429 | |
| SQA022641 | 2B (P2-B) | 3647 | 3931 | 0 | 0 | 285 | |
| SQA022642 | 2C (P2-C) | 3932 | 4894 | 0 | 0 | 963 | |
| SQA022643 | 3'UTR | 7121 | 7161 | 0 | 0 | 41 | |
| SQA022644 | 3A (P3-A) | 4895 | 5128 | 0 | 0 | 234 | |
| SQA022645 | 3B (VPg) | 5129 | 5191 | 0 | 0 | 63 | |
| SQA022646 | protease 3C | 5192 | 5740 | 0 | 0 | 549 | |
| SQA022647 | 3D | 5741 | 7117 | 0 | 0 | 1377 | |
| SQA022648 | 5'UTR | 1 | 625 | 0 | 0 | 625 | |
| SQA022649 | CDS | 626 | 7120 | 0 | 0 | 6495 | |
| SQA022650 | VP4/2 | 626 | 1060 | 0 | 0 | 435 | |
| SQA022651 | genome | 1 | 7161 | 0 | 0 | 7161 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA001581 | protease 3C | 1523 | 1705 | 0 | 0 | 183 | |
| SPA001582 | 3D | 1706 | 2164 | 0 | 0 | 459 | |
| SPA001583 | 3B (VPg) | 1502 | 1522 | 0 | 0 | 21 | |
| SPA001584 | 3A (P3-A) | 1424 | 1501 | 0 | 0 | 78 | |
| SPA001585 | 2C (P2-C) | 1103 | 1423 | 0 | 0 | 321 | |
| SPA001586 | 2B (P2-B) | 1008 | 1102 | 0 | 0 | 95 | |
| SPA001587 | 2A (P2-A) | 865 | 1007 | 0 | 0 | 143 | |
| SPA001588 | 1D (VP1) | 570 | 864 | 0 | 0 | 295 | |
| SPA001589 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA001590 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA001591 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA001592 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA001593 | CDS | 1 | 2164 | 0 | 0 | 2164 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19213880 | Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. | 2009 | Science | View More |