| RVdb StrainID | ANP07237 | GenBank Accession | JF781508.1 |
| Species | RVA | Sequence Length | 6749 nt |
| Serotype | 18 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus A strain HRV-A18_p1035_sR96_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A18_p1035_sR96_2008 | Sampling Date | 2008-04-19 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina HiSeq 2000 | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022209 | 1A (VP4) | 351 | 557 | 0 | 0 | 207 | |
| SQA022210 | 1B (VP2) | 558 | 1436 | 0 | 0 | 879 | |
| SQA022211 | 1C (VP3) | 1437 | 2150 | 0 | 0 | 714 | |
| SQA022212 | 1D (VP1) | 2151 | 3011 | 0 | 0 | 861 | |
| SQA022213 | 2A (P2-A) | 3012 | 3437 | 0 | 0 | 426 | |
| SQA022214 | 2B (P2-B) | 3438 | 3722 | 0 | 0 | 285 | |
| SQA022215 | 2C (P2-C) | 3723 | 4688 | 0 | 0 | 966 | |
| SQA022216 | 3A (P3-A) | 4689 | 4919 | 0 | 0 | 231 | |
| SQA022217 | 3B (VPg) | 4920 | 4982 | 0 | 0 | 63 | |
| SQA022218 | protease 3C | 4983 | 5531 | 0 | 0 | 549 | |
| SQA022219 | 3D | 5532 | 6749 | 0 | 1 | 1218 | |
| SQA022220 | 5'UTR | 1 | 350 | 1 | 0 | 350 | |
| SQA022221 | CDS | 351 | 6749 | 0 | 1 | 6399 | |
| SQA022222 | VP4/2 | 351 | 785 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003089 | protease 3C | 1545 | 1727 | 0 | 0 | 183 | |
| SPA003090 | 3D | 1728 | 2133 | 0 | 1 | 406 | |
| SPA003091 | 3B (VPg) | 1524 | 1544 | 0 | 0 | 21 | |
| SPA003092 | 3A (P3-A) | 1447 | 1523 | 0 | 0 | 77 | |
| SPA003093 | 2C (P2-C) | 1125 | 1446 | 0 | 0 | 322 | |
| SPA003094 | 2B (P2-B) | 1030 | 1124 | 0 | 0 | 95 | |
| SPA003095 | 2A (P2-A) | 888 | 1029 | 0 | 0 | 142 | |
| SPA003096 | 1D (VP1) | 601 | 887 | 0 | 0 | 287 | |
| SPA003097 | 1C (VP3) | 363 | 600 | 0 | 0 | 238 | |
| SPA003098 | 1B (VP2) | 70 | 362 | 0 | 0 | 293 | |
| SPA003099 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003100 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003101 | CDS | 1 | 2133 | 0 | 0 | 2133 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |