| RVdb StrainID | ANP07232 | GenBank Accession | JN112340.1 |
| Species | RVA | Sequence Length | 7097 nt |
| Serotype | 66 Checked by RVdb | Serotype (GenBank) | 66 |
| Definition | Human rhinovirus 66 strain HRV-A66_p1086_sR457_2008, partial genome | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A66_p1086_sR457_2008 | Sampling Date | 2008-03-05 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 185923 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022193 | 1A (VP4) | 589 | 795 | 0 | 0 | 207 | |
| SQA022194 | 1B (VP2) | 796 | 1584 | 0 | 0 | 789 | |
| SQA022195 | 1C (VP3) | 1585 | 2298 | 0 | 0 | 714 | |
| SQA022196 | 1D (VP1) | 2299 | 3162 | 0 | 0 | 864 | |
| SQA022197 | 2A (P2-A) | 3163 | 3588 | 0 | 0 | 426 | |
| SQA022198 | 2B (P2-B) | 3589 | 3873 | 0 | 0 | 285 | |
| SQA022199 | 2C (P2-C) | 3874 | 4839 | 0 | 0 | 966 | |
| SQA022200 | 3'UTR | 7066 | 7097 | 0 | 1 | 32 | |
| SQA022201 | 3A (P3-A) | 4840 | 5070 | 0 | 0 | 231 | |
| SQA022202 | 3B (VPg) | 5071 | 5133 | 0 | 0 | 63 | |
| SQA022203 | protease 3C | 5134 | 5682 | 0 | 0 | 549 | |
| SQA022204 | 3D | 5683 | 7062 | 0 | 0 | 1380 | |
| SQA022205 | 5'UTR | 1 | 588 | 1 | 0 | 588 | |
| SQA022206 | CDS | 589 | 7065 | 0 | 0 | 6477 | |
| SQA022207 | VP4/2 | 589 | 1023 | 0 | 0 | 435 | |
| SQA022208 | genome | 1 | 7097 | 1 | 1 | 7097 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003341 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA003342 | 3D | 1699 | 2158 | 0 | 0 | 460 | |
| SPA003343 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA003344 | 3A (P3-A) | 1418 | 1494 | 0 | 0 | 77 | |
| SPA003345 | 2C (P2-C) | 1096 | 1417 | 0 | 0 | 322 | |
| SPA003346 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA003347 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
| SPA003348 | 1D (VP1) | 571 | 858 | 0 | 0 | 288 | |
| SPA003349 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA003350 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA003351 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003352 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003353 | CDS | 1 | 2158 | 0 | 0 | 2158 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |