| RVdb StrainID | ANP07227 | GenBank Accession | JN541272.1 |
| Species | RVA | Sequence Length | 7049 nt |
| Serotype | 38 Checked by RVdb | Serotype (GenBank) | 38 |
| Definition | Human rhinovirus A strain HRV-A38_p1097_sR855_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A38_p1097_sR855_2008 | Sampling Date | 2008-06-09 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022179 | 1A (VP4) | 611 | 817 | 0 | 0 | 207 | |
| SQA022180 | 1B (VP2) | 818 | 1603 | 0 | 0 | 786 | |
| SQA022181 | 1C (VP3) | 1604 | 2317 | 0 | 0 | 714 | |
| SQA022182 | 1D (VP1) | 2318 | 3187 | 0 | 0 | 870 | |
| SQA022183 | 2A (P2-A) | 3188 | 3613 | 0 | 0 | 426 | |
| SQA022184 | 2B (P2-B) | 3614 | 3898 | 0 | 0 | 285 | |
| SQA022185 | 2C (P2-C) | 3899 | 4864 | 0 | 0 | 966 | |
| SQA022186 | 3A (P3-A) | 4865 | 5095 | 0 | 0 | 231 | |
| SQA022187 | 3B (VPg) | 5096 | 5158 | 0 | 0 | 63 | |
| SQA022188 | protease 3C | 5159 | 5716 | 0 | 1 | 558 | |
| SQA022189 | 3D | 5717 | 7049 | 1 | 1 | 1333 | |
| SQA022190 | 5'UTR | 1 | 610 | 0 | 0 | 610 | |
| SQA022191 | CDS | 611 | 7049 | 0 | 1 | 6439 | |
| SQA022192 | VP4/2 | 611 | 1045 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003419 | protease 3C | 1517 | 1670 | 0 | 1 | 154 | |
| SPA003420 | 3D | 1703 | 2146 | 1 | 1 | 444 | |
| SPA003421 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA003422 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA003423 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA003424 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA003425 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
| SPA003426 | 1D (VP1) | 570 | 859 | 0 | 0 | 290 | |
| SPA003427 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA003428 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA003429 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003430 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003431 | CDS | 1 | 2146 | 0 | 0 | 2146 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |