| RVdb StrainID | ANP07222 | GenBank Accession | JN614992.1 |
| Species | RVA | Sequence Length | 6354 nt |
| Serotype | 16 Checked by RVdb | Serotype (GenBank) | 16 |
| Definition | Human rhinovirus A strain HRV-A16_p1172_sR1218_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A16_p1172_sR1218_2009 | Sampling Date | 2009-02-05 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022165 | 1A (VP4) | 489 | 695 | 0 | 0 | 207 | |
| SQA022166 | 1B (VP2) | 696 | 1478 | 0 | 0 | 783 | |
| SQA022167 | 1C (VP3) | 1479 | 2192 | 0 | 0 | 714 | |
| SQA022168 | 1D (VP1) | 2193 | 3047 | 0 | 0 | 855 | |
| SQA022169 | 2A (P2-A) | 3048 | 3473 | 0 | 0 | 426 | |
| SQA022170 | 2B (P2-B) | 3474 | 3758 | 0 | 0 | 285 | |
| SQA022171 | 2C (P2-C) | 3759 | 4724 | 0 | 0 | 966 | |
| SQA022172 | 3A (P3-A) | 4725 | 4955 | 0 | 0 | 231 | |
| SQA022173 | 3B (VPg) | 4956 | 5018 | 0 | 0 | 63 | |
| SQA022174 | protease 3C | 5019 | 5567 | 0 | 0 | 549 | |
| SQA022175 | 3D | 5568 | 6354 | 0 | 1 | 787 | |
| SQA022176 | 5'UTR | 1 | 488 | 1 | 0 | 488 | |
| SQA022177 | CDS | 489 | 6354 | 0 | 1 | 5866 | |
| SQA022178 | VP4/2 | 489 | 923 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003484 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA003485 | 3D | 1694 | 1955 | 0 | 1 | 262 | |
| SPA003486 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA003487 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA003488 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA003489 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA003490 | 2A (P2-A) | 854 | 995 | 0 | 0 | 142 | |
| SPA003491 | 1D (VP1) | 569 | 853 | 0 | 0 | 285 | |
| SPA003492 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA003493 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA003494 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003495 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003496 | CDS | 1 | 1955 | 0 | 0 | 1955 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |