| RVdb StrainID | ANP07217 | GenBank Accession | JN621243.1 |
| Species | RVA | Sequence Length | 6757 nt |
| Serotype | 36 Checked by RVdb | Serotype (GenBank) | 36 |
| Definition | Human rhinovirus A strain HRV-A36_p1124_sR1007_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A36_p1124_sR1007_2009 | Sampling Date | 2009-04-04 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022151 | 1A (VP4) | 531 | 737 | 0 | 0 | 207 | |
| SQA022152 | 1B (VP2) | 738 | 1538 | 0 | 0 | 801 | |
| SQA022153 | 1C (VP3) | 1539 | 2252 | 0 | 0 | 714 | |
| SQA022154 | 1D (VP1) | 2253 | 3122 | 0 | 0 | 870 | |
| SQA022155 | 2A (P2-A) | 3123 | 3545 | 0 | 0 | 423 | |
| SQA022156 | 2B (P2-B) | 3546 | 3830 | 0 | 0 | 285 | |
| SQA022157 | 2C (P2-C) | 3831 | 4793 | 0 | 0 | 963 | |
| SQA022158 | 3A (P3-A) | 4794 | 5021 | 0 | 0 | 228 | |
| SQA022159 | 3B (VPg) | 5022 | 5084 | 0 | 0 | 63 | |
| SQA022160 | protease 3C | 5085 | 5633 | 0 | 0 | 549 | |
| SQA022161 | 3D | 5634 | 6757 | 0 | 1 | 1124 | |
| SQA022162 | 5'UTR | 1 | 530 | 1 | 0 | 530 | |
| SQA022163 | CDS | 531 | 6757 | 0 | 1 | 6227 | |
| SQA022164 | VP4/2 | 531 | 965 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003549 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA003550 | 3D | 1702 | 2075 | 0 | 1 | 374 | |
| SPA003551 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 | |
| SPA003552 | 3A (P3-A) | 1422 | 1497 | 0 | 0 | 76 | |
| SPA003553 | 2C (P2-C) | 1101 | 1421 | 0 | 0 | 321 | |
| SPA003554 | 2B (P2-B) | 1006 | 1100 | 0 | 0 | 95 | |
| SPA003555 | 2A (P2-A) | 865 | 1005 | 0 | 0 | 141 | |
| SPA003556 | 1D (VP1) | 575 | 864 | 0 | 0 | 290 | |
| SPA003557 | 1C (VP3) | 337 | 574 | 0 | 0 | 238 | |
| SPA003558 | 1B (VP2) | 70 | 336 | 0 | 0 | 267 | |
| SPA003559 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003560 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003561 | CDS | 1 | 2075 | 0 | 0 | 2075 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |