| RVdb StrainID | ANP07172 | GenBank Accession | JN798561.1 |
| Species | RVA | Sequence Length | 7060 nt |
| Serotype | 49 Checked by RVdb | Serotype (GenBank) | 49 |
| Definition | Human rhinovirus A strain HRV-A49_p1161_sR2880_2008 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A49_p1161_sR2880_2008 | Sampling Date | 2008-09-13 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022112 | 1A (VP4) | 559 | 765 | 0 | 0 | 207 | |
| SQA022113 | 1B (VP2) | 766 | 1548 | 0 | 0 | 783 | |
| SQA022114 | 1C (VP3) | 1549 | 2259 | 0 | 0 | 711 | |
| SQA022115 | 1D (VP1) | 2260 | 3012 | 0 | 1 | 753 | |
| SQA022116 | 2A (P2-A) | 3160 | 3534 | 1 | 0 | 375 | |
| SQA022117 | 2B (P2-B) | 3535 | 3819 | 0 | 0 | 285 | |
| SQA022118 | 2C (P2-C) | 3820 | 4785 | 0 | 0 | 966 | |
| SQA022119 | 3'UTR | 7012 | 7052 | 0 | 0 | 41 | |
| SQA022120 | 3A (P3-A) | 4786 | 5016 | 0 | 0 | 231 | |
| SQA022121 | 3B (VPg) | 5017 | 5079 | 0 | 0 | 63 | |
| SQA022122 | protease 3C | 5080 | 5628 | 0 | 0 | 549 | |
| SQA022123 | 3D | 5629 | 7008 | 0 | 0 | 1380 | |
| SQA022124 | 5'UTR | 1 | 558 | 1 | 0 | 558 | |
| SQA022125 | CDS | 559 | 7011 | 0 | 0 | 6453 | |
| SQA022126 | VP4/2 | 559 | 993 | 0 | 0 | 435 | |
| SQA022127 | genome | 1 | 7060 | 1 | 0 | 7060 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPX004948 | CDS | 1 | 2150 | 0 | 0 | 2150 | |
| SPX004985 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPX005062 | 3D | 1691 | 2150 | 0 | 0 | 460 | |
| SPX005063 | 2C (P2-C) | 1088 | 1409 | 0 | 0 | 322 | |
| SPX005064 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPX005065 | 1D (VP1) | 568 | 818 | 0 | 1 | 251 | |
| SPX005066 | 1C (VP3) | 331 | 567 | 0 | 0 | 237 | |
| SPX005067 | protease 3C | 1508 | 1690 | 0 | 0 | 183 | |
| SPX005068 | 2A (P2-A) | 868 | 992 | 1 | 0 | 125 | |
| SPX005069 | 2B (P2-B) | 993 | 1087 | 0 | 0 | 95 | |
| SPX005070 | 3A (P3-A) | 1410 | 1486 | 0 | 0 | 77 | |
| SPX005071 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPX005072 | 3B (VPg) | 1487 | 1507 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |