| RVdb StrainID | ANP07167 | GenBank Accession | JN798575.1 |
| Species | RVA | Sequence Length | 6892 nt |
| Serotype | 10 Checked by RVdb | Serotype (GenBank) | 10 |
| Definition | Human rhinovirus A strain HRV-A10_p1122_sR3195_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A10_p1122_sR3195_2009 | Sampling Date | 2009-04-18 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022098 | 1A (VP4) | 575 | 781 | 0 | 0 | 207 | |
| SQA022099 | 1B (VP2) | 782 | 1576 | 0 | 0 | 795 | |
| SQA022100 | 1C (VP3) | 1577 | 2290 | 0 | 0 | 714 | |
| SQA022101 | 1D (VP1) | 2291 | 3154 | 0 | 0 | 864 | |
| SQA022102 | 2A (P2-A) | 3155 | 3580 | 0 | 0 | 426 | |
| SQA022103 | 2B (P2-B) | 3581 | 3865 | 0 | 0 | 285 | |
| SQA022104 | 2C (P2-C) | 3866 | 4831 | 0 | 0 | 966 | |
| SQA022105 | 3A (P3-A) | 4832 | 5062 | 0 | 0 | 231 | |
| SQA022106 | 3B (VPg) | 5063 | 5125 | 0 | 0 | 63 | |
| SQA022107 | protease 3C | 5126 | 5674 | 0 | 0 | 549 | |
| SQA022108 | 3D | 5675 | 6892 | 0 | 1 | 1218 | |
| SQA022109 | 5'UTR | 1 | 574 | 1 | 0 | 574 | |
| SQA022110 | CDS | 575 | 6892 | 0 | 1 | 6318 | |
| SQA022111 | VP4/2 | 575 | 1010 | 0 | 0 | 436 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003718 | protease 3C | 1518 | 1700 | 0 | 0 | 183 | |
| SPA003719 | 3D | 1701 | 2106 | 0 | 1 | 406 | |
| SPA003720 | 3B (VPg) | 1497 | 1517 | 0 | 0 | 21 | |
| SPA003721 | 3A (P3-A) | 1420 | 1496 | 0 | 0 | 77 | |
| SPA003722 | 2C (P2-C) | 1098 | 1419 | 0 | 0 | 322 | |
| SPA003723 | 2B (P2-B) | 1003 | 1097 | 0 | 0 | 95 | |
| SPA003724 | 2A (P2-A) | 861 | 1002 | 0 | 0 | 142 | |
| SPA003725 | 1D (VP1) | 573 | 860 | 0 | 0 | 288 | |
| SPA003726 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA003727 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA003728 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003729 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003730 | CDS | 1 | 2106 | 0 | 0 | 2106 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |