| RVdb StrainID | ANP07162 | GenBank Accession | JN798580.1 |
| Species | RVA | Sequence Length | 6283 nt |
| Serotype | 28 Checked by RVdb | Serotype (GenBank) | 28 |
| Definition | Human rhinovirus A strain HRV-A28_p1175_sR3303_2010 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A28_p1175_sR3303_2010 | Sampling Date | 2010-04-24 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022085 | 1A (VP4) | 231 | 437 | 0 | 0 | 207 | |
| SQA022086 | 1B (VP2) | 438 | 1226 | 0 | 0 | 789 | |
| SQA022087 | 1C (VP3) | 1227 | 1940 | 0 | 0 | 714 | |
| SQA022088 | 1D (VP1) | 1941 | 2813 | 0 | 0 | 873 | |
| SQA022089 | 2A (P2-A) | 2814 | 3242 | 0 | 0 | 429 | |
| SQA022090 | 2B (P2-B) | 3243 | 3527 | 0 | 0 | 285 | |
| SQA022091 | 2C (P2-C) | 3528 | 4490 | 0 | 0 | 963 | |
| SQA022092 | 3A (P3-A) | 4491 | 4724 | 0 | 0 | 234 | |
| SQA022093 | 3B (VPg) | 4725 | 4787 | 0 | 0 | 63 | |
| SQA022094 | protease 3C | 4788 | 5336 | 0 | 0 | 549 | |
| SQA022095 | 3D | 5337 | 6283 | 0 | 1 | 947 | |
| SQA022096 | CDS | 231 | 6283 | 0 | 1 | 6053 | |
| SQA022097 | VP4/2 | 231 | 665 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003783 | protease 3C | 1520 | 1702 | 0 | 0 | 183 | |
| SPA003784 | 3D | 1703 | 2018 | 0 | 1 | 316 | |
| SPA003785 | 3B (VPg) | 1499 | 1519 | 0 | 0 | 21 | |
| SPA003786 | 3A (P3-A) | 1421 | 1498 | 0 | 0 | 78 | |
| SPA003787 | 2C (P2-C) | 1100 | 1420 | 0 | 0 | 321 | |
| SPA003788 | 2B (P2-B) | 1005 | 1099 | 0 | 0 | 95 | |
| SPA003789 | 2A (P2-A) | 862 | 1004 | 0 | 0 | 143 | |
| SPA003790 | 1D (VP1) | 571 | 861 | 0 | 0 | 291 | |
| SPA003791 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA003792 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA003793 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003794 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003795 | CDS | 1 | 2018 | 0 | 0 | 2018 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |