| RVdb StrainID | ANP07157 | GenBank Accession | JN798586.1 |
| Species | RVA | Sequence Length | 6858 nt |
| Serotype | 80 Checked by RVdb | Serotype (GenBank) | 80 |
| Definition | Human rhinovirus A strain HRV-A80_p1138_sR1041_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A80_p1138_sR1041_2009 | Sampling Date | 2009-02-05 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022071 | 1A (VP4) | 414 | 620 | 0 | 0 | 207 | |
| SQA022072 | 1B (VP2) | 621 | 1406 | 0 | 0 | 786 | |
| SQA022073 | 1C (VP3) | 1407 | 2120 | 0 | 0 | 714 | |
| SQA022074 | 1D (VP1) | 2121 | 2996 | 0 | 0 | 876 | |
| SQA022075 | 2A (P2-A) | 2997 | 3425 | 0 | 0 | 429 | |
| SQA022076 | 2B (P2-B) | 3426 | 3710 | 0 | 0 | 285 | |
| SQA022077 | 2C (P2-C) | 3711 | 4673 | 0 | 0 | 963 | |
| SQA022078 | 3A (P3-A) | 4674 | 4904 | 0 | 0 | 231 | |
| SQA022079 | 3B (VPg) | 4905 | 4967 | 0 | 0 | 63 | |
| SQA022080 | protease 3C | 4968 | 5516 | 0 | 0 | 549 | |
| SQA022081 | 3D | 5517 | 6858 | 0 | 1 | 1342 | |
| SQA022082 | 5'UTR | 1 | 413 | 1 | 0 | 413 | |
| SQA022083 | CDS | 414 | 6858 | 0 | 1 | 6445 | |
| SQA022084 | VP4/2 | 414 | 848 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003848 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA003849 | 3D | 1702 | 2148 | 0 | 1 | 447 | |
| SPA003850 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 | |
| SPA003851 | 3A (P3-A) | 1421 | 1497 | 0 | 0 | 77 | |
| SPA003852 | 2C (P2-C) | 1100 | 1420 | 0 | 0 | 321 | |
| SPA003853 | 2B (P2-B) | 1005 | 1099 | 0 | 0 | 95 | |
| SPA003854 | 2A (P2-A) | 862 | 1004 | 0 | 0 | 143 | |
| SPA003855 | 1D (VP1) | 570 | 861 | 0 | 0 | 292 | |
| SPA003856 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA003857 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA003858 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003859 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003860 | CDS | 1 | 2148 | 0 | 0 | 2148 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |