| RVdb StrainID | ANP07147 | GenBank Accession | JN815250.1 |
| Species | RVA | Sequence Length | 6641 nt |
| Serotype | 33 Checked by RVdb | Serotype (GenBank) | 33 |
| Definition | Human rhinovirus A strain HRV-A33_p1152_sR1111_2009 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A33_p1152_sR1111_2009 | Sampling Date | 2009-05-09 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022044 | 1A (VP4) | 166 | 372 | 0 | 0 | 207 | |
| SQA022045 | 1B (VP2) | 373 | 1158 | 0 | 0 | 786 | |
| SQA022046 | 1C (VP3) | 1159 | 1872 | 0 | 0 | 714 | |
| SQA022047 | 1D (VP1) | 1873 | 2730 | 0 | 0 | 858 | |
| SQA022048 | 2A (P2-A) | 2731 | 3156 | 0 | 0 | 426 | |
| SQA022049 | 2B (P2-B) | 3157 | 3441 | 0 | 0 | 285 | |
| SQA022050 | 2C (P2-C) | 3442 | 4407 | 0 | 0 | 966 | |
| SQA022051 | 3A (P3-A) | 4408 | 4638 | 0 | 0 | 231 | |
| SQA022052 | 3B (VPg) | 4639 | 4701 | 0 | 0 | 63 | |
| SQA022053 | protease 3C | 4702 | 5250 | 0 | 0 | 549 | |
| SQA022054 | 3D | 5251 | 6630 | 0 | 0 | 1380 | |
| SQA022055 | CDS | 166 | 6633 | 0 | 0 | 6468 | |
| SQA022056 | VP4/2 | 166 | 600 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004056 | protease 3C | 1513 | 1695 | 0 | 0 | 183 | |
| SPA004057 | 3D | 1696 | 2155 | 0 | 0 | 460 | |
| SPA004058 | 3B (VPg) | 1492 | 1512 | 0 | 0 | 21 | |
| SPA004059 | 3A (P3-A) | 1415 | 1491 | 0 | 0 | 77 | |
| SPA004060 | 2C (P2-C) | 1093 | 1414 | 0 | 0 | 322 | |
| SPA004061 | 2B (P2-B) | 998 | 1092 | 0 | 0 | 95 | |
| SPA004062 | 2A (P2-A) | 856 | 997 | 0 | 0 | 142 | |
| SPA004063 | 1D (VP1) | 570 | 855 | 0 | 0 | 286 | |
| SPA004064 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA004065 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA004066 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004067 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004068 | CDS | 1 | 2155 | 0 | 0 | 2155 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |