| RVdb StrainID | ANP07142 | GenBank Accession | JN837690.1 |
| Species | RVA | Sequence Length | 7015 nt |
| Serotype | 75 Checked by RVdb | Serotype (GenBank) | 75 |
| Definition | Human rhinovirus A strain HRV-A75_p1038_sR149_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A75_p1038_sR149_2008 | Sampling Date | 2008-04-19 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022030 | 1A (VP4) | 542 | 748 | 0 | 0 | 207 | |
| SQA022031 | 1B (VP2) | 749 | 1534 | 0 | 0 | 786 | |
| SQA022032 | 1C (VP3) | 1535 | 2248 | 0 | 0 | 714 | |
| SQA022033 | 1D (VP1) | 2249 | 3115 | 0 | 0 | 867 | |
| SQA022034 | 2A (P2-A) | 3116 | 3541 | 0 | 0 | 426 | |
| SQA022035 | 2B (P2-B) | 3542 | 3826 | 0 | 0 | 285 | |
| SQA022036 | 2C (P2-C) | 3827 | 4792 | 0 | 0 | 966 | |
| SQA022037 | 3A (P3-A) | 4793 | 5023 | 0 | 0 | 231 | |
| SQA022038 | 3B (VPg) | 5024 | 5086 | 0 | 0 | 63 | |
| SQA022039 | protease 3C | 5087 | 5635 | 0 | 0 | 549 | |
| SQA022040 | 3D | 5636 | 7015 | 0 | 1 | 1380 | |
| SQA022041 | 5'UTR | 1 | 541 | 1 | 0 | 541 | |
| SQA022042 | CDS | 542 | 7015 | 0 | 1 | 6474 | |
| SQA022043 | VP4/2 | 542 | 976 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003900 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA003901 | 3D | 1699 | 2158 | 0 | 0 | 460 | |
| SPA003902 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA003903 | 3A (P3-A) | 1418 | 1494 | 0 | 0 | 77 | |
| SPA003904 | 2C (P2-C) | 1096 | 1417 | 0 | 0 | 322 | |
| SPA003905 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA003906 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
| SPA003907 | 1D (VP1) | 570 | 858 | 0 | 0 | 289 | |
| SPA003908 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA003909 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA003910 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003911 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003912 | CDS | 1 | 2158 | 0 | 0 | 2158 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |