| RVdb StrainID | ANP07137 | GenBank Accession | JN837697.1 |
| Species | RVA | Sequence Length | 7048 nt |
| Serotype | 36 Checked by RVdb | Serotype (GenBank) | 36 |
| Definition | Human rhinovirus A strain HRV-A36_p1163_sR2897_2009_g2 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A36_p1163_sR2897_2009_g2 | Sampling Date | 2009-04-26 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA022015 | 1A (VP4) | 541 | 747 | 0 | 0 | 207 | |
| SQA022016 | 1B (VP2) | 748 | 1548 | 0 | 0 | 801 | |
| SQA022017 | 1C (VP3) | 1549 | 2262 | 0 | 0 | 714 | |
| SQA022018 | 1D (VP1) | 2263 | 3129 | 0 | 0 | 867 | |
| SQA022019 | 2A (P2-A) | 3130 | 3555 | 0 | 0 | 426 | |
| SQA022020 | 2B (P2-B) | 3556 | 3840 | 0 | 0 | 285 | |
| SQA022021 | 2C (P2-C) | 3841 | 4803 | 0 | 0 | 963 | |
| SQA022022 | 3A (P3-A) | 4804 | 5031 | 0 | 0 | 228 | |
| SQA022023 | 3B (VPg) | 5032 | 5094 | 0 | 0 | 63 | |
| SQA022024 | protease 3C | 5095 | 5643 | 0 | 0 | 549 | |
| SQA022025 | 3D | 5644 | 7023 | 0 | 0 | 1380 | |
| SQA022026 | 5'UTR | 1 | 540 | 1 | 0 | 540 | |
| SQA022027 | CDS | 541 | 7026 | 0 | 0 | 6486 | |
| SQA022028 | VP4/2 | 541 | 975 | 0 | 0 | 435 | |
| SQA022029 | genome | 1 | 7048 | 1 | 1 | 7048 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003965 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA003966 | 3D | 1702 | 2161 | 0 | 0 | 460 | |
| SPA003967 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 | |
| SPA003968 | 3A (P3-A) | 1422 | 1497 | 0 | 0 | 76 | |
| SPA003969 | 2C (P2-C) | 1101 | 1421 | 0 | 0 | 321 | |
| SPA003970 | 2B (P2-B) | 1006 | 1100 | 0 | 0 | 95 | |
| SPA003971 | 2A (P2-A) | 864 | 1005 | 0 | 0 | 142 | |
| SPA003972 | 1D (VP1) | 575 | 863 | 0 | 0 | 289 | |
| SPA003973 | 1C (VP3) | 337 | 574 | 0 | 0 | 238 | |
| SPA003974 | 1B (VP2) | 70 | 336 | 0 | 0 | 267 | |
| SPA003975 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003976 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003977 | CDS | 1 | 2161 | 0 | 0 | 2161 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |