| RVdb StrainID | ANP06927 | GenBank Accession | JN990704.1 |
| Species | RVA | Sequence Length | 7011 nt |
| Serotype | 16 Checked by RVdb | Serotype (GenBank) | 16 |
| Definition | Human rhinovirus A strain HRV-A16_p1109_sR642_2008 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A16_p1109_sR642_2008 | Sampling Date | 2008 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA021881 | 1A (VP4) | 515 | 721 | 0 | 0 | 207 | |
| SQA021882 | 1B (VP2) | 722 | 1504 | 0 | 0 | 783 | |
| SQA021883 | 1C (VP3) | 1505 | 2218 | 0 | 0 | 714 | |
| SQA021884 | 1D (VP1) | 2219 | 3073 | 0 | 0 | 855 | |
| SQA021885 | 2A (P2-A) | 3074 | 3499 | 0 | 0 | 426 | |
| SQA021886 | 2B (P2-B) | 3500 | 3784 | 0 | 0 | 285 | |
| SQA021887 | 2C (P2-C) | 3785 | 4750 | 0 | 0 | 966 | |
| SQA021888 | 3'UTR | 6977 | 7011 | 0 | 1 | 35 | |
| SQA021889 | 3A (P3-A) | 4751 | 4981 | 0 | 0 | 231 | |
| SQA021890 | 3B (VPg) | 4982 | 5044 | 0 | 0 | 63 | |
| SQA021891 | protease 3C | 5045 | 5593 | 0 | 0 | 549 | |
| SQA021892 | 3D | 5594 | 6973 | 0 | 0 | 1380 | |
| SQA021893 | 5'UTR | 1 | 514 | 1 | 0 | 514 | |
| SQA021894 | CDS | 515 | 6976 | 0 | 0 | 6462 | |
| SQA021895 | VP4/2 | 515 | 949 | 0 | 0 | 435 | |
| SQA021896 | genome | 1 | 7011 | 1 | 1 | 7011 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004133 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA004134 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPA004135 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA004136 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA004137 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA004138 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA004139 | 2A (P2-A) | 854 | 995 | 0 | 0 | 142 | |
| SPA004140 | 1D (VP1) | 569 | 853 | 0 | 0 | 285 | |
| SPA004141 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA004142 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA004143 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004144 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004145 | CDS | 1 | 2153 | 0 | 0 | 2153 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |