| RVdb StrainID | ANP06817 | GenBank Accession | JQ747747.1 |
| Species | RVA | Sequence Length | 6874 nt |
| Serotype | 21 Checked by RVdb | Serotype (GenBank) | 21 |
| Definition | Human rhinovirus A strain HRV-A21_p1295_s3993_2000 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A21_p1295_s3993_2000 | Sampling Date | 2000 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA021840 | 1A (VP4) | 439 | 645 | 0 | 0 | 207 | |
| SQA021841 | 1B (VP2) | 646 | 1425 | 0 | 0 | 780 | |
| SQA021842 | 1C (VP3) | 1426 | 2148 | 0 | 0 | 723 | |
| SQA021843 | 1D (VP1) | 2149 | 3009 | 0 | 0 | 861 | |
| SQA021844 | 2A (P2-A) | 3010 | 3435 | 0 | 0 | 426 | |
| SQA021845 | 2B (P2-B) | 3436 | 3720 | 0 | 0 | 285 | |
| SQA021846 | 2C (P2-C) | 3721 | 4686 | 0 | 0 | 966 | |
| SQA021847 | 3A (P3-A) | 4687 | 4917 | 0 | 0 | 231 | |
| SQA021848 | 3B (VPg) | 4918 | 4980 | 0 | 0 | 63 | |
| SQA021849 | protease 3C | 4981 | 5529 | 0 | 0 | 549 | |
| SQA021850 | 3D | 5530 | 6874 | 0 | 1 | 1345 | |
| SQA021851 | 5'UTR | 1 | 438 | 1 | 0 | 438 | |
| SQA021852 | CDS | 439 | 6874 | 0 | 1 | 6436 | |
| SQA021853 | VP4/2 | 439 | 873 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004782 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA004783 | 3D | 1698 | 2145 | 0 | 1 | 448 | |
| SPA004784 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA004785 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA004786 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA004787 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA004788 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA004789 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA004790 | 1C (VP3) | 330 | 570 | 0 | 0 | 241 | |
| SPA004791 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPA004792 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004793 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004794 | CDS | 1 | 2145 | 0 | 0 | 2145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |