| RVdb StrainID | ANP06812 | GenBank Accession | JQ837716.1 |
| Species | RVA | Sequence Length | 7096 nt |
| Serotype | 89 Checked by RVdb | Serotype (GenBank) | 89 |
| Definition | Human rhinovirus A strain HRV-A89_p1290_s3853_2000 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A89_p1290_s3853_2000 | Sampling Date | 2000 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA021826 | 1A (VP4) | 618 | 824 | 0 | 0 | 207 | |
| SQA021827 | 1B (VP2) | 825 | 1625 | 0 | 0 | 801 | |
| SQA021828 | 1C (VP3) | 1626 | 2339 | 0 | 0 | 714 | |
| SQA021829 | 1D (VP1) | 2340 | 3215 | 0 | 0 | 876 | |
| SQA021830 | 2A (P2-A) | 3216 | 3641 | 0 | 0 | 426 | |
| SQA021831 | 2B (P2-B) | 3642 | 3926 | 0 | 0 | 285 | |
| SQA021832 | 2C (P2-C) | 3927 | 4889 | 0 | 0 | 963 | |
| SQA021833 | 3A (P3-A) | 4890 | 5117 | 0 | 0 | 228 | |
| SQA021834 | 3B (VPg) | 5118 | 5180 | 0 | 0 | 63 | |
| SQA021835 | protease 3C | 5181 | 5729 | 0 | 0 | 549 | |
| SQA021836 | 3D | 5730 | 7096 | 0 | 1 | 1367 | |
| SQA021837 | 5'UTR | 1 | 617 | 1 | 0 | 617 | |
| SQA021838 | CDS | 618 | 7096 | 0 | 1 | 6479 | |
| SQA021839 | VP4/2 | 618 | 1052 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004935 | protease 3C | 1522 | 1704 | 0 | 0 | 183 | |
| SPA004936 | 3D | 1705 | 2159 | 0 | 1 | 455 | |
| SPA004937 | 3B (VPg) | 1501 | 1521 | 0 | 0 | 21 | |
| SPA004938 | 3A (P3-A) | 1425 | 1500 | 0 | 0 | 76 | |
| SPA004939 | 2C (P2-C) | 1104 | 1424 | 0 | 0 | 321 | |
| SPA004940 | 2B (P2-B) | 1009 | 1103 | 0 | 0 | 95 | |
| SPA004941 | 2A (P2-A) | 867 | 1008 | 0 | 0 | 142 | |
| SPA004942 | 1D (VP1) | 575 | 866 | 0 | 0 | 292 | |
| SPA004943 | 1C (VP3) | 337 | 574 | 0 | 0 | 238 | |
| SPA004944 | 1B (VP2) | 70 | 336 | 0 | 0 | 267 | |
| SPA004945 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004946 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004947 | CDS | 1 | 2159 | 0 | 0 | 2159 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |