| RVdb StrainID | ANP06802 | GenBank Accession | JX025555.1 |
| Species | RVA | Sequence Length | 6728 nt |
| Serotype | 106 Corrected by RVdb | Serotype (GenBank) | 71 |
| Definition | Human rhinovirus A strain HRV-A71_p1047_sR141_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A71_p1047_sR141_2008 | Sampling Date | 2008 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA021809 | 1A (VP4) | 503 | 709 | 0 | 0 | 207 | |
| SQA021810 | 1B (VP2) | 710 | 1495 | 0 | 0 | 786 | |
| SQA021811 | 1C (VP3) | 1496 | 2197 | 0 | 0 | 702 | |
| SQA021812 | 1D (VP1) | 2198 | 3094 | 0 | 0 | 897 | |
| SQA021813 | 2A (P2-A) | 3095 | 3523 | 0 | 0 | 429 | |
| SQA021814 | 2B (P2-B) | 3524 | 3808 | 0 | 0 | 285 | |
| SQA021815 | 2C (P2-C) | 3809 | 4771 | 0 | 0 | 963 | |
| SQA021816 | 3A (P3-A) | 4772 | 5005 | 0 | 0 | 234 | |
| SQA021817 | 3B (VPg) | 5006 | 5068 | 0 | 0 | 63 | |
| SQA021818 | protease 3C | 5069 | 5617 | 0 | 0 | 549 | |
| SQA021819 | 3D | 5618 | 6728 | 0 | 1 | 1111 | |
| SQA021820 | 5'UTR | 1 | 502 | 1 | 0 | 502 | |
| SQA021821 | CDS | 503 | 6728 | 0 | 1 | 6226 | |
| SQA021822 | VP4/2 | 503 | 937 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA005039 | protease 3C | 1523 | 1705 | 0 | 0 | 183 | |
| SPA005040 | 3D | 1706 | 2075 | 0 | 1 | 370 | |
| SPA005041 | 3B (VPg) | 1502 | 1522 | 0 | 0 | 21 | |
| SPA005042 | 3A (P3-A) | 1424 | 1501 | 0 | 0 | 78 | |
| SPA005043 | 2C (P2-C) | 1103 | 1423 | 0 | 0 | 321 | |
| SPA005044 | 2B (P2-B) | 1008 | 1102 | 0 | 0 | 95 | |
| SPA005045 | 2A (P2-A) | 865 | 1007 | 0 | 0 | 143 | |
| SPA005046 | 1D (VP1) | 566 | 864 | 0 | 0 | 299 | |
| SPA005047 | 1C (VP3) | 332 | 565 | 0 | 0 | 234 | |
| SPA005048 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA005049 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA005050 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA005051 | CDS | 1 | 2075 | 0 | 0 | 2075 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |