| RVdb StrainID | ANP06797 | GenBank Accession | JX074051.1 |
| Species | RVA | Sequence Length | 6932 nt |
| Serotype | 40 Checked by RVdb | Serotype (GenBank) | 40 |
| Definition | Human rhinovirus A strain HRV-A40_p1174_sR1231_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A40_p1174_sR1231_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA021795 | 1A (VP4) | 458 | 664 | 0 | 0 | 207 | |
| SQA021796 | 1B (VP2) | 665 | 1462 | 0 | 0 | 798 | |
| SQA021797 | 1C (VP3) | 1463 | 2176 | 0 | 0 | 714 | |
| SQA021798 | 1D (VP1) | 2177 | 3034 | 0 | 0 | 858 | |
| SQA021799 | 2A (P2-A) | 3035 | 3460 | 0 | 0 | 426 | |
| SQA021800 | 2B (P2-B) | 3461 | 3745 | 0 | 0 | 285 | |
| SQA021801 | 2C (P2-C) | 3746 | 4711 | 0 | 0 | 966 | |
| SQA021802 | 3A (P3-A) | 4712 | 4942 | 0 | 0 | 231 | |
| SQA021803 | 3B (VPg) | 4943 | 5005 | 0 | 0 | 63 | |
| SQA021804 | protease 3C | 5006 | 5554 | 0 | 0 | 549 | |
| SQA021805 | 3D | 5555 | 6932 | 0 | 1 | 1378 | |
| SQA021806 | 5'UTR | 1 | 457 | 1 | 0 | 457 | |
| SQA021807 | CDS | 458 | 6932 | 0 | 1 | 6475 | |
| SQA021808 | VP4/2 | 458 | 892 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA005103 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA005104 | 3D | 1700 | 2158 | 0 | 1 | 459 | |
| SPA005105 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA005106 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA005107 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA005108 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA005109 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
| SPA005110 | 1D (VP1) | 574 | 859 | 0 | 0 | 286 | |
| SPA005111 | 1C (VP3) | 336 | 573 | 0 | 0 | 238 | |
| SPA005112 | 1B (VP2) | 70 | 335 | 0 | 0 | 266 | |
| SPA005113 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA005114 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA005115 | CDS | 1 | 2158 | 0 | 0 | 2158 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |