| RVdb StrainID | ANP00007 | GenBank Accession | ON989183.1 |
| Species | RVA | Sequence Length | 4875 nt |
| Serotype | 25 Checked by RVdb | Serotype (GenBank) | 25 |
| Definition | Rhinovirus A strain RV-A25-USA-Nov-2020-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-10-08 |
| Strain Name | RV-A25-USA-Nov-2020-Tempe-AZ | Sampling Date | 2020 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | influenza-like Illness | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA015715 | 1A (VP4) | 89 | 295 | 0 | 0 | 207 | |
| SQA015716 | 1B (VP2) | 296 | 1093 | 0 | 0 | 798 | |
| SQA015717 | 1C (VP3) | 1094 | 1807 | 0 | 0 | 714 | |
| SQA015718 | 1D (VP1) | 1808 | 2653 | 0 | 0 | 846 | |
| SQA015719 | 2A (P2-A) | 2654 | 3079 | 0 | 0 | 426 | |
| SQA015720 | 2B (P2-B) | 3080 | 3364 | 0 | 0 | 285 | |
| SQA015721 | 2C (P2-C) | 3365 | 4330 | 0 | 0 | 966 | |
| SQA015722 | 3A (P3-A) | 4331 | 4561 | 0 | 0 | 231 | |
| SQA015723 | 3B (VPg) | 4562 | 4624 | 0 | 0 | 63 | |
| SQA015724 | protease 3C | 4625 | 4875 | 0 | 1 | 251 | |
| SQA015725 | CDS | 89 | 4875 | 0 | 1 | 4787 | |
| SQA015726 | VP4/2 | 89 | 523 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA031915 | 3B (VPg) | 1492 | 1512 | 0 | 0 | 21 | |
| SPA031916 | 3A (P3-A) | 1415 | 1491 | 0 | 0 | 77 | |
| SPA031917 | 2C (P2-C) | 1093 | 1414 | 0 | 0 | 322 | |
| SPA031918 | 2B (P2-B) | 998 | 1092 | 0 | 0 | 95 | |
| SPA031919 | 2A (P2-A) | 856 | 997 | 0 | 0 | 142 | |
| SPA031920 | 1D (VP1) | 574 | 855 | 0 | 0 | 282 | |
| SPA031921 | 1C (VP3) | 336 | 573 | 0 | 0 | 238 | |
| SPA031922 | 1B (VP2) | 70 | 335 | 0 | 0 | 266 | |
| SPA031923 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA031924 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA031925 | CDS | 1 | 1595 | 0 | 0 | 1595 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |