| RVdb StrainID | ANM07940 | GenBank Accession | FJ445138.1 |
| Species | RVA | Sequence Length | 7134 nt |
| Serotype | 54 Checked by RVdb | Serotype (GenBank) | 54 |
| Definition | Human rhinovirus 54 strain ATCC VR-1164, complete genome | GenBank Submission Date | 2009-04-10 |
| Strain Name | ATCC VR-1164 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 185914 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014856 | 1A (VP4) | 612 | 818 | 0 | 0 | 207 | |
| SQA014857 | 1B (VP2) | 819 | 1613 | 0 | 0 | 795 | |
| SQA014858 | 1C (VP3) | 1614 | 2327 | 0 | 0 | 714 | |
| SQA014859 | 1D (VP1) | 2328 | 3185 | 0 | 0 | 858 | |
| SQA014860 | 2A (P2-A) | 3186 | 3611 | 0 | 0 | 426 | |
| SQA014861 | 2B (P2-B) | 3612 | 3896 | 0 | 0 | 285 | |
| SQA014862 | 2C (P2-C) | 3897 | 4862 | 0 | 0 | 966 | |
| SQA014863 | 3'UTR | 7089 | 7134 | 0 | 0 | 46 | |
| SQA014864 | 3A (P3-A) | 4863 | 5093 | 0 | 0 | 231 | |
| SQA014865 | 3B (VPg) | 5094 | 5156 | 0 | 0 | 63 | |
| SQA014866 | protease 3C | 5157 | 5705 | 0 | 0 | 549 | |
| SQA014867 | 3D | 5706 | 7085 | 0 | 0 | 1380 | |
| SQA014868 | 5'UTR | 1 | 611 | 0 | 0 | 611 | |
| SQA014869 | CDS | 612 | 7088 | 0 | 0 | 6477 | |
| SQA014870 | VP4/2 | 612 | 1046 | 0 | 0 | 435 | |
| SQA014871 | genome | 1 | 7134 | 0 | 0 | 7134 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA001412 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA001413 | 3D | 1699 | 2158 | 0 | 0 | 460 | |
| SPA001414 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA001415 | 3A (P3-A) | 1418 | 1494 | 0 | 0 | 77 | |
| SPA001416 | 2C (P2-C) | 1096 | 1417 | 0 | 0 | 322 | |
| SPA001417 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA001418 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
| SPA001419 | 1D (VP1) | 573 | 858 | 0 | 0 | 286 | |
| SPA001420 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA001421 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA001422 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA001423 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA001424 | CDS | 1 | 2158 | 0 | 0 | 2158 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19213880 | Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. | 2009 | Science | View More |