| RVdb StrainID | ANM07905 | GenBank Accession | FJ445183.1 |
| Species | RVA | Sequence Length | 7145 nt |
| Serotype | 78 Checked by RVdb | Serotype (GenBank) | 78 |
| Definition | Human rhinovirus 78 strain ATCC VR-1188, complete genome | GenBank Submission Date | 2009-04-10 |
| Strain Name | ATCC VR-1188 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 147685 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014744 | 1A (VP4) | 623 | 829 | 0 | 0 | 207 | |
| SQA014745 | 1B (VP2) | 830 | 1621 | 0 | 0 | 792 | |
| SQA014746 | 1C (VP3) | 1622 | 2335 | 0 | 0 | 714 | |
| SQA014747 | 1D (VP1) | 2336 | 3196 | 0 | 0 | 861 | |
| SQA014748 | 2A (P2-A) | 3197 | 3625 | 0 | 0 | 429 | |
| SQA014749 | 2B (P2-B) | 3626 | 3910 | 0 | 0 | 285 | |
| SQA014750 | 2C (P2-C) | 3911 | 4876 | 0 | 0 | 966 | |
| SQA014751 | 3'UTR | 7103 | 7145 | 0 | 0 | 43 | |
| SQA014752 | 3A (P3-A) | 4877 | 5107 | 0 | 0 | 231 | |
| SQA014753 | 3B (VPg) | 5108 | 5170 | 0 | 0 | 63 | |
| SQA014754 | protease 3C | 5171 | 5719 | 0 | 0 | 549 | |
| SQA014755 | 3D | 5720 | 7099 | 0 | 0 | 1380 | |
| SQA014756 | 5'UTR | 1 | 622 | 0 | 0 | 622 | |
| SQA014757 | CDS | 623 | 7102 | 0 | 0 | 6480 | |
| SQA014758 | VP4/2 | 623 | 1057 | 0 | 0 | 435 | |
| SQA014759 | genome | 1 | 7145 | 0 | 0 | 7145 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA001867 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA001868 | 3D | 1700 | 2159 | 0 | 0 | 460 | |
| SPA001869 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA001870 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA001871 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA001872 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA001873 | 2A (P2-A) | 859 | 1001 | 0 | 0 | 143 | |
| SPA001874 | 1D (VP1) | 572 | 858 | 0 | 0 | 287 | |
| SPA001875 | 1C (VP3) | 334 | 571 | 0 | 0 | 238 | |
| SPA001876 | 1B (VP2) | 70 | 333 | 0 | 0 | 264 | |
| SPA001877 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA001878 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA001879 | CDS | 1 | 2159 | 0 | 0 | 2159 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19213880 | Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. | 2009 | Science | View More |