RVdb StrainID ANM07405 GenBank Accession JF285317.1
Species RVA Sequence Length 6891 nt
Serotype Checked by RVdb Serotype (GenBank) 9
Definition Human rhinovirus A isolate F78_URT-1.4m polyprotein gene, partial cds GenBank Submission Date 2016-07-25
Strain Name F78_URT-1.4m Sampling Date 2006-08-15
Sampling Country Switzerland Sampling location Geneva
Isolation Source nasopharyngeal swab NCBI Taxon ID 147711
Sequencing Technology -N/A- Assembly Method -N/A-

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQA014444 1A (VP4) 505 711 0 0 207
SQA014445 1B (VP2) 712 1497 0 0 786
SQA014446 1C (VP3) 1498 2211 0 0 714
SQA014447 1D (VP1) 2212 3078 0 0 867
SQA014448 2A (P2-A) 3079 3504 0 0 426
SQA014449 2B (P2-B) 3505 3789 0 0 285
SQA014450 2C (P2-C) 3790 4755 0 0 966
SQA014451 3A (P3-A) 4756 4986 0 0 231
SQA014452 3B (VPg) 4987 5049 0 0 63
SQA014453 protease 3C 5050 5598 0 0 549
SQA014454 3D 5599 6891 0 1 1293
SQA014455 5'UTR 1 504 1 0 504
SQA014456 CDS 505 6891 0 1 6387
SQA014457 VP4/2 505 939 0 0 435
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPA002689 protease 3C 1516 1698 0 0 183
SPA002690 3D 1699 2129 0 1 431
SPA002691 3B (VPg) 1495 1515 0 0 21
SPA002692 3A (P3-A) 1418 1494 0 0 77
SPA002693 2C (P2-C) 1096 1417 0 0 322
SPA002694 2B (P2-B) 1001 1095 0 0 95
SPA002695 2A (P2-A) 859 1000 0 0 142
SPA002696 1D (VP1) 570 858 0 0 289
SPA002697 1C (VP3) 332 569 0 0 238
SPA002698 1B (VP2) 70 331 0 0 262
SPA002699 1A (VP4) 1 69 0 0 69
SPA002700 VP4/2 1 145 0 0 145
SPA002701 CDS 1 2129 0 0 2129
PMID Title Publication Year Journal View in RVdb
21713005 Rhinovirus genome variation during chronic upper and lower respiratory tract infections. 2011 PLoS One View More