RVdb StrainID ANM07400 GenBank Accession JF285322.1
Species RVA Sequence Length 7093 nt
Serotype 64  Checked by RVdb Serotype (GenBank) 64
Definition Human rhinovirus A isolate P37_URT_LCT-2.9m polyprotein gene, complete cds GenBank Submission Date 2014-01-31
Strain Name P37_URT_LCT-2.9m Sampling Date 2001-04-20
Sampling Country Switzerland Sampling location Geneva
Isolation Source nasopharyngeal swab NCBI Taxon ID 147711
Sequencing Technology -N/A- Assembly Method -N/A-

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQA014428 1A (VP4) 594 800 0 0 207
SQA014429 1B (VP2) 801 1583 0 0 783
SQA014430 1C (VP3) 1584 2294 0 0 711
SQA014431 1D (VP1) 2295 3161 0 0 867
SQA014432 2A (P2-A) 3162 3587 0 0 426
SQA014433 2B (P2-B) 3588 3872 0 0 285
SQA014434 2C (P2-C) 3873 4838 0 0 966
SQA014435 3'UTR 7065 7093 0 1 29
SQA014436 3A (P3-A) 4839 5069 0 0 231
SQA014437 3B (VPg) 5070 5132 0 0 63
SQA014438 protease 3C 5133 5681 0 0 549
SQA014439 3D 5682 7061 0 0 1380
SQA014440 5'UTR 1 593 1 0 593
SQA014441 CDS 594 7064 0 0 6471
SQA014442 VP4/2 594 1028 0 0 435
SQA014443 genome 1 7093 1 1 7093
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPA002754 protease 3C 1514 1696 0 0 183
SPA002755 3D 1697 2156 0 0 460
SPA002756 3B (VPg) 1493 1513 0 0 21
SPA002757 3A (P3-A) 1416 1492 0 0 77
SPA002758 2C (P2-C) 1094 1415 0 0 322
SPA002759 2B (P2-B) 999 1093 0 0 95
SPA002760 2A (P2-A) 857 998 0 0 142
SPA002761 1D (VP1) 568 856 0 0 289
SPA002762 1C (VP3) 331 567 0 0 237
SPA002763 1B (VP2) 70 330 0 0 261
SPA002764 1A (VP4) 1 69 0 0 69
SPA002765 VP4/2 1 145 0 0 145
SPA002766 CDS 1 2156 0 0 2156
PMID Title Publication Year Journal View in RVdb
21713005 Rhinovirus genome variation during chronic upper and lower respiratory tract infections. 2011 PLoS One View More