| RVdb StrainID | ANM07240 | GenBank Accession | JF781497.1 |
| Species | RVA | Sequence Length | 7055 nt |
| Serotype | 36 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus A strain HRV-A36_p036_s2916_1999_g2 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A36_p036_s2916_1999_g2 | Sampling Date | from 1999 to 2010 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina GAIIx | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014338 | 1A (VP4) | 531 | 737 | 0 | 0 | 207 | |
| SQA014339 | 1B (VP2) | 738 | 1538 | 0 | 0 | 801 | |
| SQA014340 | 1C (VP3) | 1539 | 2252 | 0 | 0 | 714 | |
| SQA014341 | 1D (VP1) | 2253 | 3119 | 0 | 0 | 867 | |
| SQA014342 | 2A (P2-A) | 3120 | 3545 | 0 | 0 | 426 | |
| SQA014343 | 2B (P2-B) | 3546 | 3830 | 0 | 0 | 285 | |
| SQA014344 | 2C (P2-C) | 3831 | 4793 | 0 | 0 | 963 | |
| SQA014345 | 3'UTR | 7017 | 7055 | 0 | 0 | 39 | |
| SQA014346 | 3A (P3-A) | 4794 | 5021 | 0 | 0 | 228 | |
| SQA014347 | 3B (VPg) | 5022 | 5084 | 0 | 0 | 63 | |
| SQA014348 | protease 3C | 5085 | 5633 | 0 | 0 | 549 | |
| SQA014349 | 3D | 5634 | 7013 | 0 | 0 | 1380 | |
| SQA014350 | 5'UTR | 1 | 530 | 1 | 0 | 530 | |
| SQA014351 | CDS | 531 | 7016 | 0 | 0 | 6486 | |
| SQA014352 | VP4/2 | 531 | 965 | 0 | 0 | 435 | |
| SQA014353 | genome | 1 | 7055 | 1 | 0 | 7055 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003050 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA003051 | 3D | 1702 | 2161 | 0 | 0 | 460 | |
| SPA003052 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 | |
| SPA003053 | 3A (P3-A) | 1422 | 1497 | 0 | 0 | 76 | |
| SPA003054 | 2C (P2-C) | 1101 | 1421 | 0 | 0 | 321 | |
| SPA003055 | 2B (P2-B) | 1006 | 1100 | 0 | 0 | 95 | |
| SPA003056 | 2A (P2-A) | 864 | 1005 | 0 | 0 | 142 | |
| SPA003057 | 1D (VP1) | 575 | 863 | 0 | 0 | 289 | |
| SPA003058 | 1C (VP3) | 337 | 574 | 0 | 0 | 238 | |
| SPA003059 | 1B (VP2) | 70 | 336 | 0 | 0 | 267 | |
| SPA003060 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003061 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003062 | CDS | 1 | 2161 | 0 | 0 | 2161 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |