| RVdb StrainID | ANM07235 | GenBank Accession | JF781511.1 |
| Species | RVA | Sequence Length | 6088 nt |
| Serotype | 12 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus A strain HRV-A12_s202712_2007 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A12_s202712_2007 | Sampling Date | from 1999 to 2010 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina GAIIx | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014325 | 1A (VP4) | 55 | 261 | 0 | 0 | 207 | |
| SQA014326 | 1B (VP2) | 262 | 1050 | 0 | 0 | 789 | |
| SQA014327 | 1C (VP3) | 1051 | 1764 | 0 | 0 | 714 | |
| SQA014328 | 1D (VP1) | 1765 | 2625 | 0 | 0 | 861 | |
| SQA014329 | 2A (P2-A) | 2626 | 3054 | 0 | 0 | 429 | |
| SQA014330 | 2B (P2-B) | 3055 | 3339 | 0 | 0 | 285 | |
| SQA014331 | 2C (P2-C) | 3340 | 4302 | 0 | 0 | 963 | |
| SQA014332 | 3A (P3-A) | 4303 | 4533 | 0 | 0 | 231 | |
| SQA014333 | 3B (VPg) | 4534 | 4596 | 0 | 0 | 63 | |
| SQA014334 | protease 3C | 4597 | 5145 | 0 | 0 | 549 | |
| SQA014335 | 3D | 5146 | 6088 | 0 | 1 | 943 | |
| SQA014336 | CDS | 55 | 6088 | 0 | 1 | 6034 | |
| SQA014337 | VP4/2 | 55 | 489 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003354 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA003355 | 3D | 1698 | 2011 | 0 | 1 | 314 | |
| SPA003356 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA003357 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA003358 | 2C (P2-C) | 1096 | 1416 | 0 | 0 | 321 | |
| SPA003359 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA003360 | 2A (P2-A) | 858 | 1000 | 0 | 0 | 143 | |
| SPA003361 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA003362 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA003363 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA003364 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003365 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003366 | CDS | 1 | 2011 | 0 | 0 | 2011 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |